Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G42720 - ( glycosyl hydrolase family 17 protein )
49 Proteins interacs with AT5G42720Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G09630 | PredictedPhenotypic Enhancement | FSW = 0.0802
| Unknown | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT1G20260 | PredictedPhenotypic Enhancement | FSW = 0.2037
| Unknown | HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT5G13450 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1308
| Unknown | ATP SYNTHASE DELTA CHAIN MITOCHONDRIAL PUTATIVE / H(+)-TRANSPORTING TWO-SECTOR ATPASE DELTA (OSCP) SUBUNIT PUTATIVE |
AT3G07100 | Predictedsynthetic growth defect | FSW = 0.0083
| Unknown | PROTEIN TRANSPORT PROTEIN SEC24 PUTATIVE |
AT3G22890 | PredictedPhenotypic Enhancementsynthetic growth defect | FSW = 0.2594
| Unknown | APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP) |
AT5G09660 | PredictedPhenotypic Enhancement | FSW = 0.1327
| Unknown | PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE |
AT5G51820 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1386
| Unknown | PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE |
AT1G48860 | PredictedPhenotypic Enhancement | FSW = 0.2053
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE |
AT5G60540 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSSynthetic LethalityPhenotypic Enhancement | FSW = 0.3434
| Unknown | PDX2 (PYRIDOXINE BIOSYNTHESIS 2) GLUTAMINASE/ GLUTAMINYL-TRNA SYNTHASE (GLUTAMINE-HYDROLYZING)/ PROTEIN HETERODIMERIZATION |
AT5G47700 | Predictedsynthetic growth defect | FSW = 0.0423
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1C) |
AT3G25800 | Predictedtwo hybrid | FSW = 0.0198
| Unknown | PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT1G04750 | Predictedsynthetic growth defect | FSW = 0.1901
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT4G02450 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1889
| Unknown | GLYCINE-RICH PROTEIN |
AT1G80050 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.1622
| Unknown | APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2) ADENINE PHOSPHORIBOSYLTRANSFERASE/ PHOSPHATE TRANSMEMBRANE TRANSPORTER |
AT4G18800 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSPhenotypic Suppression | FSW = 0.1207
| Unknown | ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING |
AT4G28860 | PredictedPhenotypic Enhancement | FSW = 0.0901
| Unknown | CKL4 (CASEIN KINASE I-LIKE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G13445 | PredictedPhenotypic Enhancement | FSW = 0.1107
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT1G28460 | PredictedPhenotypic Enhancement | FSW = 0.1222
| Unknown | AGL59 (AGAMOUS-LIKE 59) DNA BINDING / TRANSCRIPTION FACTOR |
AT2G30160 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.4157
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT2G19980 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2491
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT4G33710 | PredictedPhenotypic Enhancement | FSW = 0.0894
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT3G60360 | Predictedsynthetic growth defect | FSW = 0.1610
| Unknown | EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14) |
AT4G39200 | PredictedSynthetic Lethalitysynthetic growth defectPhenotypic Enhancement | FSW = 0.3576
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
AT2G17800 | PredictedPhenotypic Enhancement | FSW = 0.0047
| Unknown | ARAC1 GTP BINDING |
AT1G05180 | PredictedPhenotypic Enhancement | FSW = 0.0289
| Unknown | AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME |
AT1G11510 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-MSReconstituted ComplexCo-purificationsynthetic growth defect | FSW = 0.2300
| Unknown | DNA-BINDING STOREKEEPER PROTEIN-RELATED |
AT1G11755 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.2469
| Unknown | LEW1 (LEAF WILTING 1) DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE |
AT1G21370 | PredictedPhenotypic Enhancement | FSW = 0.1492
| Unknown | UNKNOWN PROTEIN |
AT1G26320 | PredictedPhenotypic Enhancement | FSW = 0.2222
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT1G27040 | PredictedPhenotypic Suppression | FSW = 0.0755
| Unknown | NITRATE TRANSPORTER PUTATIVE |
AT1G52500 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.2356
| Unknown | ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE |
AT1G55300 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSPhenotypic Suppression | FSW = 0.2096
| Unknown | TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT1G68020 | PredictedPhenotypic Enhancement | FSW = 0.1846
| Unknown | ATTPS6 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT2G37420 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.3390
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT3G11240 | PredictedPhenotypic Enhancement | FSW = 0.2007
| Unknown | ATE2 (ARGININE-TRNA PROTEIN TRANSFERASE 2) ARGINYLTRANSFERASE |
AT3G50780 | PredictedPhenotypic Enhancement | FSW = 0.1591
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PRLI-INTERACTING FACTOR-RELATED (TAIRAT1G638501) HAS 173 BLAST HITS TO 173 PROTEINS IN 14 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 8 FUNGI - 0 PLANTS - 164 VIRUSES - 0 OTHER EUKARYOTES - 1 (SOURCE NCBI BLINK) |
AT3G59540 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.2118
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
AT4G04695 | PredictedPhenotypic Enhancement | FSW = 0.0585
| Unknown | CPK31 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G19560 | Predictedsynthetic growth defect | FSW = 0.4444
| Unknown | CYCT12 CYCLIN-DEPENDENT PROTEIN KINASE |
AT4G36050 | PredictedPhenotypic Enhancement | FSW = 0.1332
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT4G38250 | PredictedPhenotypic Enhancement | FSW = 0.1273
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT5G01430 | PredictedPhenotypic Enhancement | FSW = 0.2460
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT5G14060 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.3960
| Unknown | CARAB-AK-LYS AMINO ACID BINDING / ASPARTATE KINASE |
AT1G08910 | Predictedinterologs mapping | FSW = 0.0243
| Unknown | EMB3001 (EMBRYO DEFECTIVE 3001) ZINC ION BINDING |
AT2G03130 | PredictedAffinity Capture-MS | FSW = 0.3067
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
AT2G15910 | PredictedSynthetic Lethality | FSW = 0.2856
| Unknown | CSL ZINC FINGER DOMAIN-CONTAINING PROTEIN |
AT2G48100 | PredictedSynthetic Lethality | FSW = 0.2041
| Unknown | EXONUCLEASE FAMILY PROTEIN |
AT5G16040 | PredictedAffinity Capture-MS | FSW = 0.0226
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT5G45620 | PredictedPhenotypic Enhancement | FSW = 0.1429
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454