Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G46650 - ( CB5-C (CYTOCHROME B5 ISOFORM C) heme binding )
34 Proteins interacs with AT2G46650Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G47120 | Experimental | FSW = 0.0912
| Unknown | ATBI1 (BAX INHIBITOR 1) |
AT3G08710 | Predictedtwo hybrid | FSW = 0.1159
| Unknown | ATH9 (THIOREDOXIN H-TYPE 9) |
AT1G11320 | Predictedtwo hybrid | FSW = 0.1353
| Unknown | UNKNOWN PROTEIN |
AT3G45770 | Predictedtwo hybrid | FSW = 0.2623
| Unknown | OXIDOREDUCTASE ZINC-BINDING DEHYDROGENASE FAMILY PROTEIN |
AT1G19660 | PredictedSynthetic Lethality | FSW = 0.0044
| Unknown | WOUND-RESPONSIVE FAMILY PROTEIN |
AT2G42590 | Predictedtwo hybrid | FSW = 0.2159
| Unknown | GRF9 (GENERAL REGULATORY FACTOR 9) CALCIUM ION BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT4G32410 | Predictedtwo hybrid | FSW = 0.0969
| Unknown | CESA1 (CELLULOSE SYNTHASE 1) CELLULOSE SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT4G39180 | Predictedtwo hybrid | FSW = 0.2835
| Unknown | SEC14 PHOSPHATIDYLINOSITOL TRANSPORTER |
AT5G26340 | Predictedtwo hybrid | FSW = 0.1314
| Unknown | MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G69850 | Predictedtwo hybrid | FSW = 0.0735
| Unknown | ATNRT12 (ARABIDOPSIS THALIANA NITRATE TRANSPORTER 12) CALCIUM ION BINDING / TRANSPORTER |
AT4G15000 | Predictedtwo hybrid | FSW = 0.0695
| Unknown | 60S RIBOSOMAL PROTEIN L27 (RPL27C) |
AT5G02490 | Predictedtwo hybrid | FSW = 0.0351
| Unknown | HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2) |
AT5G44500 | Predictedtwo hybrid | FSW = 0.0073
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE |
AT2G47210 | Predictedtwo hybrid | FSW = 0.1138
| Unknown | MYB FAMILY TRANSCRIPTION FACTOR |
AT4G39160 | Predictedtwo hybrid | FSW = 0.1215
| Unknown | DNA BINDING / TRANSCRIPTION FACTOR |
AT3G10110 | Predictedtwo hybrid | FSW = 0.0262
| Unknown | MEE67 (MATERNAL EFFECT EMBRYO ARREST 67) P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER/ PROTEIN TRANSPORTER |
AT1G10060 | Predictedtwo hybrid | FSW = 0.2222
| Unknown | BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 1 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 1 (BCAT1) |
AT1G70190 | Predictedtwo hybrid | FSW = 0.3312
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
AT2G14580 | PredictedSynthetic Lethality | FSW = 0.0219
| Unknown | ATPRB1 |
AT2G32720 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0499
| Unknown | CB5-B (CYTOCHROME B5 ISOFORM B) HEME BINDING |
AT4G39100 | Predictedinterologs mapping | FSW = 0.0410
| Unknown | SHL1 (SHORT LIFE) TRANSCRIPTION FACTOR/ ZINC-MEDIATED TRANSCRIPTIONAL ACTIVATOR |
AT4G15900 | Predictedtwo hybrid | FSW = 0.2273
| Unknown | PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G07880 | Predictedtwo hybrid | FSW = 0.1327
| Unknown | ATMPK13 MAP KINASE/ KINASE |
AT1G08910 | Predictedtwo hybrid | FSW = 0.1458
| Unknown | EMB3001 (EMBRYO DEFECTIVE 3001) ZINC ION BINDING |
AT1G29230 | Predictedtwo hybrid | FSW = 0.2778
| Unknown | CIPK18 (CBL-INTERACTING PROTEIN KINASE 18) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G29190 | Predictedtwo hybrid | FSW = 0.1133
| Unknown | APUM2 (ARABIDOPSIS PUMILIO 2) RNA BINDING / BINDING |
AT1G12130 | PredictedSynthetic Lethality | FSW = 0.0357
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
AT1G66950 | Predictedtwo hybrid | FSW = 0.2706
| Unknown | PDR11 (PLEIOTROPIC DRUG RESISTANCE 11) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT1G71530 | Predictedtwo hybrid | FSW = 0.3292
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G61210 | Predictedtwo hybrid | FSW = 0.3902
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT5G19090 | Predictedtwo hybrid | FSW = 0.3529
| Unknown | HEAVY-METAL-ASSOCIATED DOMAIN-CONTAINING PROTEIN |
AT4G30820 | Predictedtwo hybrid | FSW = 0.2844
| Unknown | CYCLIN-DEPENDENT KINASE-ACTIVATING KINASE ASSEMBLY FACTOR-RELATED / CDK-ACTIVATING KINASE ASSEMBLY FACTOR-RELATED |
AT5G38110 | Predictedtwo hybrid | FSW = 0.2235
| Unknown | ASF1B (ANTI- SILENCING FUNCTION 1B) |
AT5G38290 | Predictedtwo hybrid | FSW = 0.2694
| Unknown | PEPTIDYL-TRNA HYDROLASE FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454