Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G47120 - ( ATBI1 (BAX INHIBITOR 1) )

13 Proteins interacs with AT5G47120
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G53560

Experimental

FSW = 0.2963

Class A:

endoplasmic reticulum

Class B:

vacuole

plastid

plasma membrane

nucleus

cytosol

Class D:

mitochondrion (p = 0.82)

 CB5-E (CYTOCHROME B5 ISOFORM E) HEME BINDING
AT5G48810

Experimental

FSW = 0.2735

Class A:

endoplasmic reticulum

Class B:

nucleus

cytosol

Class D:

mitochondrion (p = 0.82)

extracellular (p = 0.86)

 CB5-D (CYTOCHROME B5 ISOFORM D) HEME BINDING
AT4G29130

Experimental

FSW = 0.0333

Class B:

vacuole

unclear

nucleus

mitochondrion

endoplasmic reticulum

cytosol

Class D:

extracellular (p = 0.86)

 HXK1 (HEXOKINASE 1) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE
AT3G43810

Experimental

far western blotting

FSW = 0.0046

Class B:

plasma membrane

nucleus

endoplasmic reticulum

cytosol

 CAM7 (CALMODULIN 7) CALCIUM ION BINDING
AT1G26340

Experimental

FSW = 0.1667

Class B:

peroxisome

nucleus

endoplasmic reticulum

cytosol

 CB5-A (CYTOCHROME B5 ISOFORM A) HEME BINDING
AT2G32720

Experimental

confocal microscopy

protein complementation assay

fluorescence acceptor donor pair

two hybrid

split-reporter assay

FSW = 0.2506

Unknown

 CB5-B (CYTOCHROME B5 ISOFORM B) HEME BINDING
AT4G15900

Experimental

pull down

FSW = 0.0191

Unknown

 PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT2G46650

Experimental

FSW = 0.0912

Unknown

 CB5-C (CYTOCHROME B5 ISOFORM C) HEME BINDING
AT3G55360

Predicted

two hybrid

two hybrid

FSW = 0.0196

Class C:

endoplasmic reticulum

 CER10 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE/ FATTY ACID ELONGASE/ TRANS-2-ENOYL-COA REDUCTASE (NADPH)
AT4G32930

Predicted

two hybrid

two hybrid

FSW = 0.0435

Unknown

 UNKNOWN PROTEIN
AT5G37290

Predicted

two hybrid

two hybrid

FSW = 0.0667

Unknown

 ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN
AT5G49350

Predicted

two hybrid

FSW = 0.0443

Unknown

 UNKNOWN PROTEIN
AT1G03070

Predicted

Gene fusion method

Co-expression

FSW = 0.0667

Unknown

 GLUTAMATE BINDING

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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