Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G26200 - ( EXPRESSED IN 22 plant structures EXPRESSED DURING 13 growth stages CONTAINS InterPro DOMAIN/s Methyltransferase type 12 (InterProIPR013217) BEST Arabidopsis thaliana protein match is methyltransferase (TAIRAT1G546501) Has 1504 Blast hits to 1429 proteins in 277 species Archae - 33 Bacteria - 213 Metazoa - 664 Fungi - 202 Plants - 139 Viruses - 0 Other Eukaryotes - 253 (source NCBI BLink) )

6 Proteins interacs with AT2G26200
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G56350

Predicted

two hybrid

FSW = 0.0800

Unknown

 PYRUVATE KINASE PUTATIVE
AT5G08570

Predicted

two hybrid

FSW = 0.0923

Unknown

 PYRUVATE KINASE PUTATIVE
AT1G08700

Predicted

Phenotypic Enhancement

FSW = 0.0863

Unknown

 PRESENILIN FAMILY PROTEIN
AT2G29900

Predicted

Phenotypic Enhancement

two hybrid

FSW = 0.0444

Unknown

 PRESENILIN FAMILY PROTEIN
AT4G15930

Predicted

two hybrid

two hybrid

Co-expression

FSW = 0.0285

Unknown

 MICROTUBULE MOTOR
AT3G05540

Predicted

two hybrid

two hybrid

FSW = 0.0750

Unknown

 INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CYTOPLASM CONTAINS INTERPRO DOMAIN/S TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN (INTERPROIPR018105) TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR001983) MSS4/TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR011323) TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN CONSERVED SITE (INTERPROIPR018103) MSS4-LIKE (INTERPROIPR011057) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) (TAIRAT3G166401) HAS 640 BLAST HITS TO 640 PROTEINS IN 231 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 343 FUNGI - 110 PLANTS - 105 VIRUSES - 0 OTHER EUKARYOTES - 82 (SOURCE NCBI BLINK)

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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