Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G45710 - ( 40S ribosomal protein S27 (RPS27A) )
20 Proteins interacs with AT2G45710| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT2G37270
   | PredictedSynthetic Lethality | FSW = 0.0872
| Class C:plasma membrane | ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT5G47930
| PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.1154
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S27 (RPS27D) |
| AT3G52250
| Predictedinterologs mappingSynthetic Rescue | FSW = 0.0223
| Class C:nucleus | DNA BINDING / TRANSCRIPTION FACTOR |
| AT1G76300
| PredictedSynthetic Rescue | FSW = 0.0278
| Class C:nucleus | SMD3 (SNRNP CORE PROTEIN SMD3) |
| AT3G13080
| PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MS | FSW = 0.1471
| Unknown | ATMRP3 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / CHLOROPHYLL CATABOLITE TRANSPORTER/ GLUTATHIONE S-CONJUGATE-EXPORTING ATPASE |
| AT1G19660
| PredictedSynthetic Lethalityco-fractionationCo-fractionationSynthetic LethalityAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSSynthetic Lethalityco-fractionationCo-fractionation | FSW = 0.2018
| Unknown | WOUND-RESPONSIVE FAMILY PROTEIN |
| AT5G53480
| PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0370
| Unknown | IMPORTIN BETA-2 PUTATIVE |
| AT1G53530
| PredictedSynthetic Lethality | FSW = 0.2102
| Unknown | SIGNAL PEPTIDASE I FAMILY PROTEIN |
| AT2G47510
| PredictedAffinity Capture-WesternAffinity Capture-MSSynthetic LethalityAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSinterologs mapping | FSW = 0.3068
| Unknown | FUM1 (FUMARASE 1) CATALYTIC/ FUMARATE HYDRATASE |
| AT2G14610
| PredictedAffinity Capture-MSAffinity Capture-MSSynthetic LethalityAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSco-fractionationCo-fractionation | FSW = 0.4480
| Unknown | PR1 (PATHOGENESIS-RELATED GENE 1) |
| AT2G27170
| Predictedinterologs mapping | FSW = 0.0483
| Unknown | TTN7 (TITAN7) ATP BINDING / PROTEIN BINDING |
| AT2G32220
| Predictedsynthetic growth defectinterologs mappinginterologs mappingAffinity Capture-Westernsynthetic growth defect | FSW = 0.2207
| Unknown | 60S RIBOSOMAL PROTEIN L27 (RPL27A) |
| AT1G15440
| Predictedtwo hybrid | FSW = 0.0320
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT2G47090
| PredictedSynthetic Lethality | FSW = 0.0729
| Unknown | NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING |
| AT3G62770
| PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.0806
| Unknown | ATATG18A |
| AT4G19880
| PredictedAffinity Capture-WesternAffinity Capture-MSSynthetic LethalityAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSReconstituted Complexco-fractionationCo-fractionationSynthetic LethalityAffinity Capture-MSAffinity Capture-Western | FSW = 0.1367
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RESPONSE TO CADMIUM ION LOCATED IN CHLOROPLAST EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GLUTATHIONE S-TRANSFERASE PREDICTED (INTERPROIPR016639) GLUTATHIONE S-TRANSFERASE C-TERMINAL (INTERPROIPR004046) GLUTATHIONE S-TRANSFERASE C-TERMINAL-LIKE (INTERPROIPR010987) GLUTATHIONE S-TRANSFERASE/CHLORIDE CHANNEL C-TERMINAL (INTERPROIPR017933) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G450201) HAS 1635 BLAST HITS TO 1635 PROTEINS IN 489 SPECIES ARCHAE - 12 BACTERIA - 905 METAZOA - 23 FUNGI - 158 PLANTS - 57 VIRUSES - 0 OTHER EUKARYOTES - 480 (SOURCE NCBI BLINK) |
| AT5G42190
| PredictedAffinity Capture-MS | FSW = 0.0138
| Unknown | ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT3G28610
| PredictedAffinity Capture-MS | FSW = 0.0331
| Unknown | ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT3G60245
| PredictedSynthetic Lethality | FSW = 0.2333
| Unknown | 60S RIBOSOMAL PROTEIN L37A (RPL37AC) |
| AT3G61110
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.2560
| Unknown | ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27) STRUCTURAL CONSTITUENT OF RIBOSOME |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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