Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G53530 - ( signal peptidase I family protein )

33 Proteins interacs with AT1G53530
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G42130

Predicted

Synthetic Lethality

FSW = 0.1282

Class C:

mitochondrion

MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT3G29800

Predicted

Synthetic Lethality

FSW = 0.0216

Class C:

mitochondrion

AAA-TYPE ATPASE FAMILY
AT3G08980

Predicted

Reconstituted Complex

Phenotypic Enhancement

Phylogenetic profile method

Co-expression

FSW = 0.0216

Class C:

mitochondrion

SIGNAL PEPTIDASE I FAMILY PROTEIN
AT2G47510

Predicted

synthetic growth defect

FSW = 0.1318

Class C:

mitochondrion

FUM1 (FUMARASE 1) CATALYTIC/ FUMARATE HYDRATASE
AT2G37270

Predicted

Synthetic Lethality

FSW = 0.0953

Unknown

ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G01690

Predicted

Phenotypic Enhancement

Synthetic Lethality

FSW = 0.0071

Unknown

BINDING
AT5G01410

Predicted

interologs mapping

interologs mapping

FSW = 0.2397

Unknown

RSR4 (REDUCED SUGAR RESPONSE 4) PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION
AT1G16030

Predicted

Synthetic Lethality

FSW = 0.0319

Unknown

HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING
AT1G19660

Predicted

synthetic growth defect

FSW = 0.1149

Unknown

WOUND-RESPONSIVE FAMILY PROTEIN
AT1G66430

Predicted

Affinity Capture-MS

Reconstituted Complex

interologs mapping

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Reconstituted Complex

two hybrid

co-fractionation

Co-fractionation

FSW = 0.0994

Unknown

PFKB-TYPE CARBOHYDRATE KINASE FAMILY PROTEIN
AT2G45710

Predicted

Synthetic Lethality

FSW = 0.2102

Unknown

40S RIBOSOMAL PROTEIN S27 (RPS27A)
AT1G55690

Predicted

Synthetic Lethality

FSW = 0.0450

Unknown

SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN
AT4G13980

Predicted

biochemical

FSW = 0.0143

Unknown

AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR
AT1G29330

Predicted

Synthetic Lethality

FSW = 0.0450

Unknown

ERD2 (ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2) KDEL SEQUENCE BINDING / RECEPTOR
AT2G14580

Predicted

synthetic growth defect

FSW = 0.0772

Unknown

ATPRB1
AT2G14610

Predicted

Synthetic Lethality

FSW = 0.1976

Unknown

PR1 (PATHOGENESIS-RELATED GENE 1)
AT5G63960

Predicted

Synthetic Lethality

FSW = 0.1598

Unknown

EMB2780 (EMBRYO DEFECTIVE 2780) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT1G34340

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.1605

Unknown

ESTERASE/LIPASE/THIOESTERASE FAMILY PROTEIN
AT1G80710

Predicted

Affinity Capture-Western

Reconstituted Complex

two hybrid

Affinity Capture-MS

co-fractionation

Co-fractionation

Dosage Growth Defect

FSW = 0.0909

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G03160

Predicted

Affinity Capture-MS

FSW = 0.0099

Unknown

ASK19 (ARABIDOPSIS SKP1-LIKE 19) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G43190

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Reconstituted Complex

two hybrid

co-fractionation

Co-fractionation

Dosage Growth Defect

Affinity Capture-Western

FSW = 0.1789

Unknown

RIBONUCLEASE P FAMILY PROTEIN
AT3G63150

Predicted

synthetic growth defect

FSW = 0.0120

Unknown

MIRO2 (MIRO-RELATED GTP-ASE 2) GTPASE/ CALCIUM ION BINDING
AT5G66640

Predicted

biochemical

FSW = 0.0102

Unknown

DAR3 (DA1-RELATED PROTEIN 3)
AT1G55810

Predicted

Synthetic Lethality

FSW = 0.1166

Unknown

URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE
AT2G21890

Predicted

Synthetic Lethality

FSW = 0.1983

Unknown

CAD3 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 3) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING
AT3G60245

Predicted

Synthetic Lethality

FSW = 0.1593

Unknown

60S RIBOSOMAL PROTEIN L37A (RPL37AC)
AT3G62770

Predicted

Synthetic Lethality

FSW = 0.0791

Unknown

ATATG18A
AT4G23895

Predicted

Synthetic Lethality

FSW = 0.0139

Unknown

PLECKSTRIN HOMOLOGY (PH) DOMAIN-CONTAINING PROTEIN-RELATED
AT5G07950

Predicted

Synthetic Lethality

FSW = 0.0463

Unknown

UNKNOWN PROTEIN
AT5G24840

Predicted

synthetic growth defect

FSW = 0.0496

Unknown

TRNA (GUANINE-N7-)-METHYLTRANSFERASE
AT5G46280

Predicted

Synthetic Lethality

FSW = 0.0632

Unknown

DNA REPLICATION LICENSING FACTOR PUTATIVE
AT5G48010

Predicted

Synthetic Lethality

FSW = 0.0243

Unknown

THAS1 (THALIANOL SYNTHASE 1) CATALYTIC/ THALIANOL SYNTHASE
AT1G23465

Predicted

Gene neighbors method

Phylogenetic profile method

FSW = 0.0504

Unknown

SIGNAL PEPTIDASE-RELATED

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454