Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G33270 - ( CDC201 signal transducer )
26 Proteins interacs with AT4G33270Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G20000 | Experimental | FSW = 0.3035
| Unknown | HBT (HOBBIT) BINDING |
AT3G17510 | Experimentalpull down | FSW = 0.0394
| Unknown | CIPK1 (CBL-INTERACTING PROTEIN KINASE 1) KINASE/ PROTEIN BINDING |
AT3G02660 | PredictedAffinity Capture-MS | FSW = 0.0706
| Unknown | EMB2768 (EMBRYO DEFECTIVE 2768) ATP BINDING / RNA BINDING / AMINOACYL-TRNA LIGASE/ NUCLEOTIDE BINDING / TYROSINE-TRNA LIGASE |
AT1G80600 | PredictedGene fusion method | FSW = 0.0683
| Unknown | WIN1 (HOPW1-1-INTERACTING 1) N2-ACETYL-L-ORNITHINE2-OXOGLUTARATE 5-AMINOTRANSFERASE/ CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE |
AT3G48750 | PredictedPhenotypic Suppressionsynthetic growth defect | FSW = 0.0388
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT5G35580 | PredictedGene fusion method | FSW = 0.1714
| Unknown | ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT5G48880 | PredictedGene fusion method | FSW = 0.0626
| Unknown | PKT2 (PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 2) ACETYL-COA C-ACYLTRANSFERASE/ CATALYTIC |
AT2G25880 | Predictedin vitro | FSW = 0.0429
| Unknown | ATAUR2 (ATAURORA2) HISTONE KINASE(H3-S10 SPECIFIC) / KINASE |
AT4G14340 | PredictedGene fusion method | FSW = 0.0222
| Unknown | CKI1 (CASEIN KINASE I) KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G38130 | PredictedAffinity Capture-WesternCo-purification | FSW = 0.0220
| Unknown | HD1 (HISTONE DEACETYLASE 1) BASAL TRANSCRIPTION REPRESSOR/ HISTONE DEACETYLASE/ PROTEIN BINDING |
AT3G25980 | PredictedAffinity Capture-WesternReconstituted Complextwo hybridAffinity Capture-WesternAffinity Capture-Westernin vitroin vitroin vitroin vitroin vivoin vivoin vivoin vivoin vivoin vitroAffinity Capture-MSAffinity Capture-Westerntwo hybridCo-crystal StructureReconstituted Complex | FSW = 0.0702
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT5G40820 | PredictedPhenotypic SuppressionPhenotypic Suppression | FSW = 0.0361
| Unknown | ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE |
AT1G06590 | PredictedReconstituted Complex | FSW = 0.2926
| Unknown | UNKNOWN PROTEIN |
AT2G39090 | PredictedReconstituted Complex | FSW = 0.3391
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT1G16590 | PredictedReconstituted Complex | FSW = 0.0500
| Unknown | REV7 DNA BINDING |
AT2G33560 | Predictedtwo hybridtwo hybridtwo hybridin vitroin vitroin vitroin vivoin vivoin vivoin vivoin vitrotwo hybridAffinity Capture-Western | FSW = 0.0841
| Unknown | SPINDLE CHECKPOINT PROTEIN-RELATED |
AT1G78770 | PredictedSynthetic LethalitySynthetic RescueAffinity Capture-Western | FSW = 0.0885
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT1G20610 | PredictedAffinity Capture-Western | FSW = 0.0793
| Unknown | CYCB23 (CYCLIN B23) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G05560 | PredictedSynthetic Rescue | FSW = 0.2926
| Unknown | EMB2771 (EMBRYO DEFECTIVE 2771) UBIQUITIN-PROTEIN LIGASE |
AT4G33260 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.2727
| Unknown | CDC202 SIGNAL TRANSDUCER |
AT4G11920 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.1901
| Unknown | CCS52A2 SIGNAL TRANSDUCER |
AT4G22910 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.4246
| Unknown | FZR2 (FIZZY-RELATED 2) SIGNAL TRANSDUCER |
AT5G26900 | PredictedPhylogenetic profile method | FSW = 0.3603
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT5G27080 | PredictedPhylogenetic profile method | FSW = 0.4476
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT5G54520 | PredictedGene fusion method | FSW = 0.2000
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT5G15500 | PredictedGene fusion method | FSW = 0.3843
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454