Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G50850 - ( MAB1 (MACCI-BOU) catalytic/ pyruvate dehydrogenase (acetyl-transferring) )
38 Proteins interacs with AT5G50850| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT1G54220
   | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSin vitrointeraction predictionEnriched domain pairCo-expression | FSW = 0.3486
| Class C:vacuolemitochondrion | DIHYDROLIPOAMIDE S-ACETYLTRANSFERASE PUTATIVE |
| AT1G30120
| PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.1097
| Class C:nucleus | PDH-E1 BETA (PYRUVATE DEHYDROGENASE E1 BETA) PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) |
| AT4G24770
| Predictedtwo hybridtwo hybrid | FSW = 0.0355
| Class C:nucleus | RBP31 (31-KDA RNA BINDING PROTEIN) RNA BINDING / POLY(U) BINDING |
| AT3G13930
| PredictedAffinity Capture-MSReconstituted Complex | FSW = 0.1623
| Class C:mitochondrion | DIHYDROLIPOAMIDE S-ACETYLTRANSFERASE PUTATIVE |
| AT1G49630
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1778
| Class C:mitochondrion | ATPREP2 (ARABIDOPSIS THALIANA PRESEQUENCE PROTEASE 2) CATALYTIC/ METAL ION BINDING / METALLOENDOPEPTIDASE/ METALLOPEPTIDASE/ ZINC ION BINDING |
| AT1G48030
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0620
| Class C:mitochondrion | MTLPD1 (MITOCHONDRIAL LIPOAMIDE DEHYDROGENASE 1) ATP BINDING / DIHYDROLIPOYL DEHYDROGENASE |
| AT5G48370
| Predictedtwo hybridtwo hybrid | FSW = 0.0260
| Class C:mitochondrion | THIOESTERASE FAMILY PROTEIN |
| AT5G09300
| Predictedtwo hybridEnriched domain pairGene neighbors methodCo-expression | FSW = 0.0790
| Class C:mitochondrion | 2-OXOISOVALERATE DEHYDROGENASE PUTATIVE / 3-METHYL-2-OXOBUTANOATE DEHYDROGENASE PUTATIVE / BRANCHED-CHAIN ALPHA-KETO ACID DEHYDROGENASE E1 ALPHA SUBUNIT PUTATIVE |
| AT2G30720
| Predictedtwo hybrid | FSW = 0.0434
| Class C:mitochondrion | THIOESTERASE FAMILY PROTEIN |
| AT3G52200
| Predictedin vivoAffinity Capture-MS | FSW = 0.1353
| Class C:mitochondrion | LTA3 ATP BINDING / DIHYDROLIPOYLLYSINE-RESIDUE ACETYLTRANSFERASE |
| AT1G03090
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0571
| Class C:mitochondrion | MCCA METHYLCROTONOYL-COA CARBOXYLASE |
| AT1G59900
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSin vivointeraction predictionEnriched domain pairCo-expression | FSW = 0.1898
| Class C:mitochondrion | AT-E1 ALPHA OXIDOREDUCTASE ACTING ON THE ALDEHYDE OR OXO GROUP OF DONORS DISULFIDE AS ACCEPTOR / PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) |
| AT1G24180
| Predictedtwo hybridin vivoAffinity Capture-MSAffinity Capture-MStwo hybridEnriched domain pairCo-expression | FSW = 0.1816
| Class C:mitochondrion | IAR4 OXIDOREDUCTASE ACTING ON THE ALDEHYDE OR OXO GROUP OF DONORS DISULFIDE AS ACCEPTOR / PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) |
| AT5G63840
| PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0190
| Unknown | RSW3 (RADIAL SWELLING 3) GLUCOSIDASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
| AT1G17745
| Predictedinteraction predictiontwo hybrid | FSW = 0.0162
| Unknown | PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE) PHOSPHOGLYCERATE DEHYDROGENASE |
| AT2G34590
| PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0445
| Unknown | TRANSKETOLASE FAMILY PROTEIN |
| AT3G04050
| PredictedAffinity Capture-MS | FSW = 0.0182
| Unknown | PYRUVATE KINASE PUTATIVE |
| AT5G63680
| PredictedAffinity Capture-MS | FSW = 0.0244
| Unknown | PYRUVATE KINASE PUTATIVE |
| AT5G52640
| PredictedSynthetic Lethality | FSW = 0.0113
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
| AT5G12370
| PredictedAffinity Capture-MS | FSW = 0.0464
| Unknown | SEC10 (EXOCYST COMPLEX COMPONENT SEC10) |
| AT5G47100
| Predictedtwo hybrid | FSW = 0.0085
| Unknown | CBL9 CALCIUM ION BINDING |
| AT3G25980
| Predictedtwo hybrid | FSW = 0.0101
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
| AT5G24270
| Predictedtwo hybridtwo hybrid | FSW = 0.0139
| Unknown | SOS3 (SALT OVERLY SENSITIVE 3) CALCIUM ION BINDING / CALCIUM-DEPENDENT PROTEIN SERINE/THREONINE PHOSPHATASE |
| AT4G15900
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0077
| Unknown | PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT3G07300
| Predictedtwo hybridtwo hybrid | FSW = 0.0089
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN |
| AT3G54170
| Predictedtwo hybridtwo hybrid | FSW = 0.0244
| Unknown | ATFIP37 (ARABIDOPSIS THALIANA FKBP12 INTERACTING PROTEIN 37) PROTEIN BINDING |
| AT4G16360
| Predictedtwo hybridtwo hybrid | FSW = 0.0171
| Unknown | AMP-ACTIVATED PROTEIN KINASE |
| AT5G21170
| Predictedtwo hybrid | FSW = 0.0179
| Unknown | 5-AMP-ACTIVATED PROTEIN KINASE BETA-2 SUBUNIT PUTATIVE |
| AT1G60780
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0346
| Unknown | HAP13 (HAPLESS 13) PROTEIN BINDING |
| AT3G22590
| PredictedSynthetic LethalitySynthetic LethalityAffinity Capture-MSinteraction prediction | FSW = 0.0147
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
| AT5G23540
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0063
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
| AT3G09100
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0130
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
| AT5G19820
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0071
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
| AT3G16650
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0195
| Unknown | PP1/PP2A PHOSPHATASES PLEIOTROPIC REGULATOR 2 (PRL2) |
| AT1G10730
| PredictedAffinity Capture-MS | FSW = 0.0245
| Unknown | CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT FAMILY PROTEIN |
| AT1G66130
| Predictedtwo hybrid | FSW = 0.0780
| Unknown | OXIDOREDUCTASE N-TERMINAL DOMAIN-CONTAINING PROTEIN |
| AT1G55510
| PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0759
| Unknown | BCDH BETA1 (BRANCHED-CHAIN ALPHA-KETO ACID DECARBOXYLASE E1 BETA SUBUNIT) 3-METHYL-2-OXOBUTANOATE DEHYDROGENASE (2-METHYLPROPANOYL-TRANSFERRING)/ CATALYTIC |
| AT3G13450
| PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0806
| Unknown | DIN4 (DARK INDUCIBLE 4) 3-METHYL-2-OXOBUTANOATE DEHYDROGENASE (2-METHYLPROPANOYL-TRANSFERRING)/ CATALYTIC |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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