Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G09000 - ( ANP1 (ARABIDOPSIS NPK1-RELATED PROTEIN KINASE 1) MAP kinase kinase kinase/ kinase )

23 Proteins interacs with AT1G09000
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G37870

Predicted

Synthetic Rescue

FSW = 0.0246

Unknown

PCK1 (PHOSPHOENOLPYRUVATE CARBOXYKINASE 1) ATP BINDING / PHOSPHOENOLPYRUVATE CARBOXYKINASE (ATP)/ PHOSPHOENOLPYRUVATE CARBOXYKINASE/ PURINE NUCLEOTIDE BINDING
AT5G63840

Predicted

Synthetic Lethality

FSW = 0.0296

Unknown

RSW3 (RADIAL SWELLING 3) GLUCOSIDASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS
AT4G25630

Predicted

Affinity Capture-MS

FSW = 0.0187

Unknown

FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT1G56110

Predicted

Affinity Capture-MS

FSW = 0.0916

Unknown

NOP56 (ARABIDOPSIS HOMOLOG OF NUCLEOLAR PROTEIN NOP56)
AT2G44660

Predicted

Synthetic Lethality

FSW = 0.0653

Unknown

TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TRANSFERASE TRANSFERRING HEXOSYL GROUPS
AT2G31970

Predicted

Synthetic Lethality

FSW = 0.0322

Unknown

RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING
AT2G30910

Predicted

Synthetic Lethality

FSW = 0.1078

Unknown

ARPC1A (ACTIN-RELATED PROTEIN C1A) ACTIN BINDING / NUCLEOTIDE BINDING
AT2G39805

Predicted

Affinity Capture-MS

FSW = 0.0410

Unknown

INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN
AT5G40440

Predicted

Affinity Capture-MS

two hybrid

FSW = 0.0580

Unknown

ATMKK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 3) MAP KINASE KINASE
AT3G11910

Predicted

Affinity Capture-MS

FSW = 0.0290

Unknown

UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE
AT2G29400

Predicted

Phenotypic Enhancement

FSW = 0.0087

Unknown

TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1) PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G13780

Predicted

synthetic growth defect

FSW = 0.0531

Unknown

GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT1G80410

Predicted

synthetic growth defect

FSW = 0.0473

Unknown

EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT1G14400

Predicted

synthetic growth defect

FSW = 0.0239

Unknown

UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE
AT1G09460

Predicted

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

FSW = 0.0988

Unknown

GLUCAN ENDO-13-BETA-GLUCOSIDASE-RELATED
AT5G23290

Predicted

Synthetic Lethality

FSW = 0.0248

Unknown

PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING
AT3G27000

Predicted

Synthetic Lethality

FSW = 0.0425

Unknown

ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G29990

Predicted

Synthetic Lethality

FSW = 0.0488

Unknown

PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING
AT1G24320

Predicted

Synthetic Lethality

FSW = 0.0816

Unknown

ALPHA-GLUCOSIDASE PUTATIVE
AT1G08780

Predicted

Synthetic Lethality

FSW = 0.0567

Unknown

AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING
AT3G18430

Predicted

Synthetic Lethality

FSW = 0.0267

Unknown

CALCIUM-BINDING EF HAND FAMILY PROTEIN
AT1G54140

Predicted

Synthetic Lethality

FSW = 0.0187

Unknown

TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT1G20575

Predicted

Synthetic Rescue

FSW = 0.0370

Unknown

DOLICHYL-PHOSPHATE BETA-D-MANNOSYLTRANSFERASE PUTATIVE / DOLICHOL-PHOSPHATE MANNOSYLTRANSFERASE PUTATIVE / MANNOSE-P-DOLICHOL SYNTHASE PUTATIVE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454