Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G41100 - ( TCH3 (TOUCH 3) calcium ion binding )
13 Proteins interacs with AT2G41100Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G34650 | Experimentalpull downtwo hybridReconstituted Complex | FSW = 0.0618
| Class B:vacuoleunclearplasma membraneClass D:nucleus (p = 0.78) | PID (PINOID) KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G61210 | PredictedShared biological functionCo-expression | FSW = 0.0417
| Unknown | SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33) SNAP RECEPTOR/ PROTEIN BINDING |
AT2G37220 | PredictedGene fusion method | FSW = 0.2125
| Unknown | 29 KDA RIBONUCLEOPROTEIN CHLOROPLAST PUTATIVE / RNA-BINDING PROTEIN CP29 PUTATIVE |
AT5G50250 | PredictedGene fusion method | FSW = 0.4444
| Unknown | 31 KDA RIBONUCLEOPROTEIN CHLOROPLAST PUTATIVE / RNA-BINDING PROTEIN RNP-T PUTATIVE / RNA-BINDING PROTEIN 1/2/3 PUTATIVE / RNA-BINDING PROTEIN CP31 PUTATIVE |
AT1G72050 | PredictedGene fusion methodCo-expression | FSW = 0.2838
| Unknown | TFIIIA (TRANSCRIPTION FACTOR IIIA) 5S RDNA BINDING / 5S RRNA BINDING / NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT5G66010 | PredictedGene fusion method | FSW = 0.2092
| Unknown | RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT5G27840 | PredictedEnriched domain pairGene fusion methodCo-expression | FSW = 0.1115
| Unknown | TOPP8 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT4G24740 | PredictedShared biological functionGene fusion method | FSW = 0.0662
| Unknown | AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2) KINASE/ PROTEIN KINASE |
AT4G10260 | PredictedGene fusion method | FSW = 0.1765
| Unknown | PFKB-TYPE CARBOHYDRATE KINASE FAMILY PROTEIN |
AT1G71330 | PredictedGene fusion method | FSW = 0.0863
| Unknown | ATNAP5 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / TRANSPORTER |
AT2G31350 | PredictedGene fusion method | FSW = 0.1062
| Unknown | GLX2-5 (GLYOXALASE 2-5) HYDROXYACYLGLUTATHIONE HYDROLASE/ IRON ION BINDING / ZINC ION BINDING |
AT2G25240 | PredictedGene fusion method | FSW = 0.0972
| Unknown | SERINE-TYPE ENDOPEPTIDASE INHIBITOR |
AT3G05260 | PredictedGene fusion method | FSW = 0.0543
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454