Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT2G01630 - ( glycosyl hydrolase family 17 protein / beta-13-glucanase putative )
26 Proteins interacs with AT2G01630Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G01410 | PredictedSynthetic Lethality | FSW = 0.0113
| Class C:plasma membrane | RSR4 (REDUCED SUGAR RESPONSE 4) PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION |
AT5G08570 | PredictedPhenotypic Enhancement | FSW = 0.0762
| Class C:plasma membrane | PYRUVATE KINASE PUTATIVE |
AT4G18800 | PredictedPhenotypic Suppression | FSW = 0.0795
| Class C:plasma membrane | ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING |
AT2G19980 | PredictedPhenotypic Suppression | FSW = 0.0801
| Class C:extracellular | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT5G09590 | PredictedPhenotypic Suppression | FSW = 0.0707
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT4G21980 | PredictedPhenotypic Suppression | FSW = 0.0548
| Unknown | APG8A (AUTOPHAGY 8A) APG8 ACTIVATING ENZYME/ APG8-SPECIFIC PROTEASE/ ATG8 LIGASE |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0225
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT3G48170 | PredictedPhenotypic Suppression | FSW = 0.0275
| Unknown | ALDH10A9 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE |
AT1G10070 | PredictedPhenotypic Enhancement | FSW = 0.0151
| Unknown | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT3G51895 | PredictedReconstituted Complex | FSW = 0.0571
| Unknown | SULTR31 (SULFATE TRANSPORTER 31) SECONDARY ACTIVE SULFATE TRANSMEMBRANE TRANSPORTER/ SULFATE TRANSMEMBRANE TRANSPORTER/ TRANSPORTER |
AT1G52300 | PredictedPhenotypic Enhancement | FSW = 0.0620
| Unknown | 60S RIBOSOMAL PROTEIN L37 (RPL37B) |
AT1G23460 | PredictedPhenotypic Suppression | FSW = 0.0930
| Unknown | POLYGALACTURONASE |
AT1G25155 | PredictedPhenotypic Suppression | FSW = 0.0581
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT1G29970 | PredictedPhenotypic Suppression | FSW = 0.0323
| Unknown | RPL18AA (60S RIBOSOMAL PROTEIN L18A-1) |
AT1G55300 | PredictedPhenotypic Suppression | FSW = 0.0629
| Unknown | TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT1G01930 | PredictedAffinity Capture-MS | FSW = 0.0558
| Unknown | ZINC FINGER PROTEIN-RELATED |
AT2G14880 | PredictedAffinity Capture-MS | FSW = 0.0261
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT5G38890 | PredictedPhenotypic Enhancement | FSW = 0.0108
| Unknown | EXORIBONUCLEASE-RELATED |
AT5G56740 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridtwo hybrid | FSW = 0.0255
| Unknown | HAG2 (HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 2) H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
AT5G66610 | PredictedAffinity Capture-MS | FSW = 0.0516
| Unknown | DAR7 (DA1-RELATED PROTEIN 7) ZINC ION BINDING |
AT2G03130 | PredictedPhenotypic Suppression | FSW = 0.1076
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
AT3G06483 | PredictedPhenotypic Suppression | FSW = 0.0298
| Unknown | PDK (PYRUVATE DEHYDROGENASE KINASE) ATP BINDING / HISTIDINE PHOSPHOTRANSFER KINASE/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) KINASE |
AT3G18520 | PredictedPhenotypic Enhancement | FSW = 0.0102
| Unknown | HDA15 HISTONE DEACETYLASE |
AT4G34540 | PredictedPhenotypic Enhancement | FSW = 0.0099
| Unknown | ISOFLAVONE REDUCTASE FAMILY PROTEIN |
AT5G45620 | PredictedPhenotypic Suppression | FSW = 0.0392
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT5G20870 | PredictedGene fusion methodCo-expression | FSW = 0.0920
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454