Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G60430 - ( ARPC3 (actin-related protein C3) structural molecule )
29 Proteins interacs with AT1G60430Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G38440 | Experimentalpull downtwo hybridReconstituted Complexsplit-reporter assay | FSW = 0.0642
| Unknown | SCAR2 (SCAR HOMOLOG 2) |
ETG8936 | Experimentaltwo hybrid | FSW = 0.1250
| Unknown | SCAR2 (SCAR HOMOLOG 2) |
AT2G22640 | Experimentaltwo hybrid | FSW = 0.1589
| Unknown | BRK1 (BRICK1) |
AT2G34150 | Experimentaltwo hybrid | FSW = 0.0645
| Unknown | WAVE1 ACTIN MONOMER BINDING |
AT5G25780 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0173
| Unknown | EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2) NUCLEIC ACID BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR |
AT3G11630 | Predictedsynthetic growth defect | FSW = 0.0444
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT5G52640 | PredictedSynthetic Lethality | FSW = 0.0040
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT2G44950 | Predictedsynthetic growth defect | FSW = 0.0881
| Unknown | HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
AT3G25980 | PredictedSynthetic Lethality | FSW = 0.0074
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT2G30910 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSin vitroin vitroin vivoAffinity Capture-MSSynthetic Lethality | FSW = 0.1925
| Unknown | ARPC1A (ACTIN-RELATED PROTEIN C1A) ACTIN BINDING / NUCLEOTIDE BINDING |
AT2G31300 | Predictedinteraction predictionin vivoin vitroin vitroAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSSynthetic Lethality | FSW = 0.1773
| Unknown | ARPC1B (ACTIN-RELATED PROTEIN C1B) ACTIN BINDING / NUCLEOTIDE BINDING |
AT3G12280 | PredictedPhenotypic Enhancement | FSW = 0.0098
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT1G06900 | Predictedtwo hybrid | FSW = 0.0833
| Unknown | CATALYTIC/ METAL ION BINDING / METALLOENDOPEPTIDASE/ ZINC ION BINDING |
AT1G13180 | Predictedinteraction predictionCo-purificationAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSin vivoin vivoin vitroAffinity Capture-MS | FSW = 0.1695
| Unknown | DIS1 (DISTORTED TRICHOMES 1) ATP BINDING / ACTIN BINDING / PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G30825 | Predictedtwo hybridin vivoCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1514
| Unknown | DIS2 (DISTORTED TRICHOMES 2) STRUCTURAL MOLECULE |
AT2G33385 | Predictedin vivotwo hybrid | FSW = 0.1853
| Unknown | ARPC2B (ACTIN-RELATED PROTEIN C2B) STRUCTURAL MOLECULE |
AT3G27000 | PredictedSynthetic Lethalityin vivoCo-purificationAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0855
| Unknown | ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT4G14147 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSin vivotwo hybridAffinity Capture-MSCo-purification | FSW = 0.2105
| Unknown | ARPC4 PROTEIN BINDING |
AT1G04020 | Predictedsynthetic growth defect | FSW = 0.0783
| Unknown | BARD1 (BREAST CANCER ASSOCIATED RING 1) DNA BINDING / TRANSCRIPTION COACTIVATOR |
AT1G66740 | PredictedSynthetic Lethality | FSW = 0.0541
| Unknown | SGA2 |
AT1G73570 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0772
| Unknown | SUPPRESSOR OF LIN-12-LIKE PROTEIN-RELATED / SEL-1 PROTEIN-RELATED |
AT1G80410 | Predictedsynthetic growth defect | FSW = 0.0315
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT2G02760 | PredictedSynthetic Lethality | FSW = 0.0519
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT5G13780 | Predictedsynthetic growth defect | FSW = 0.0631
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT5G53770 | PredictedSynthetic Lethality | FSW = 0.0119
| Unknown | NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN |
AT2G22480 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0122
| Unknown | PFK5 (PHOSPHOFRUCTOKINASE 5) 6-PHOSPHOFRUCTOKINASE |
AT3G07120 | Predictedsynthetic growth defect | FSW = 0.0664
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT1G55255 | Predictedsynthetic growth defect | FSW = 0.0762
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT1G14400 | PredictedSynthetic Lethality | FSW = 0.0458
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454