Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT1G30825 - ( DIS2 (DISTORTED TRICHOMES 2) structural molecule )
27 Proteins interacs with AT1G30825Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G09140 | Experimentalpull down | FSW = 0.0356
| Unknown | SF2/ASF-LIKE SPLICING MODULATOR (SRP30) |
AT1G29170 | Experimental | FSW = 0.1053
| Unknown | WAVE2 |
AT4G14147 | Experimentalpull downpull downtwo hybridtwo hybrid | FSW = 0.2800
| Unknown | ARPC4 PROTEIN BINDING |
AT1G76030 | PredictedSynthetic Lethality | FSW = 0.0276
| Unknown | VACUOLAR ATP SYNTHASE SUBUNIT B / V-ATPASE B SUBUNIT / VACUOLAR PROTON PUMP B SUBUNIT / V-ATPASE 57 KDA SUBUNIT |
AT1G56340 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0410
| Unknown | CRT1 (CALRETICULIN 1) CALCIUM ION BINDING / UNFOLDED PROTEIN BINDING |
AT1G20260 | PredictedSynthetic Lethality | FSW = 0.0264
| Unknown | HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT3G22110 | PredictedAffinity Capture-MS | FSW = 0.0292
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G61650 | Predictedinterologs mapping | FSW = 0.0777
| Unknown | TUBG1 (GAMMA-TUBULIN) GTP BINDING / GTPASE/ STRUCTURAL MOLECULE |
AT3G43810 | Predictedinterologs mappinginterologs mappingAffinity Capture-WesternAffinity Capture-Westerntwo hybridReconstituted Complexinterologs mappinginteraction prediction | FSW = 0.0250
| Unknown | CAM7 (CALMODULIN 7) CALCIUM ION BINDING |
AT1G66410 | Predictedinterologs mappinginterologs mappingAffinity Capture-WesternAffinity Capture-Westerninterologs mappingReconstituted Complextwo hybrid | FSW = 0.0280
| Unknown | CAM4 (CALMODULIN 4) CALCIUM ION BINDING / SIGNAL TRANSDUCER |
AT2G44680 | Predictedinterologs mapping | FSW = 0.0441
| Unknown | CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE |
AT4G33720 | PredictedSynthetic Lethality | FSW = 0.0109
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT1G67730 | PredictedAffinity Capture-MS | FSW = 0.0351
| Unknown | YBR159 KETOREDUCTASE/ OXIDOREDUCTASE |
AT2G31300 | Predictedin vitroin vitroAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1514
| Unknown | ARPC1B (ACTIN-RELATED PROTEIN C1B) ACTIN BINDING / NUCLEOTIDE BINDING |
AT2G30910 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1283
| Unknown | ARPC1A (ACTIN-RELATED PROTEIN C1A) ACTIN BINDING / NUCLEOTIDE BINDING |
AT1G13180 | Predictedinteraction predictionAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3111
| Unknown | DIS1 (DISTORTED TRICHOMES 1) ATP BINDING / ACTIN BINDING / PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G60430 | Predictedtwo hybridin vivoCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1514
| Unknown | ARPC3 (ACTIN-RELATED PROTEIN C3) STRUCTURAL MOLECULE |
AT3G27000 | Predictedtwo hybridSynthetic LethalityAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0491
| Unknown | ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT2G20290 | PredictedAffinity Capture-MS | FSW = 0.0063
| Unknown | XIG MOTOR/ PROTEIN BINDING |
AT5G40530 | PredictedAffinity Capture-MS | FSW = 0.0978
| Unknown | EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S METHYLTRANSFERASE-RELATED (INTERPROIPR007823) HAS 293 BLAST HITS TO 293 PROTEINS IN 141 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 93 FUNGI - 88 PLANTS - 22 VIRUSES - 0 OTHER EUKARYOTES - 90 (SOURCE NCBI BLINK) |
AT5G60870 | PredictedAffinity Capture-MS | FSW = 0.0631
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT2G23070 | Predictedinterologs mapping | FSW = 0.0487
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT5G15070 | PredictedAffinity Capture-MS | FSW = 0.0487
| Unknown | ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING |
AT5G16040 | PredictedAffinity Capture-MS | FSW = 0.0487
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT1G24470 | PredictedAffinity Capture-MS | FSW = 0.0370
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT2G23080 | Predictedinterologs mapping | FSW = 0.0222
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT5G21170 | Predictedinteraction prediction | FSW = 0.0408
| Unknown | 5-AMP-ACTIVATED PROTEIN KINASE BETA-2 SUBUNIT PUTATIVE |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454