Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G27990 - ( unknown protein )
11 Proteins interacs with AT5G27990| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT2G40510
   | PredictedAffinity Capture-MStwo hybrid | FSW = 0.2657
| Unknown | 40S RIBOSOMAL PROTEIN S26 (RPS26A) |
| AT4G16830
| PredictedAffinity Capture-MS | FSW = 0.0711
| Unknown | NUCLEAR RNA-BINDING PROTEIN (RGGA) |
| AT5G14170
| Predictedtwo hybridtwo hybrid | FSW = 0.0169
| Unknown | CHC1 |
| AT5G37720
| PredictedAffinity Capture-MS | FSW = 0.0173
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
| AT3G56340
| Predictedtwo hybridAffinity Capture-MStwo hybridtwo hybridtwo hybridAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0649
| Unknown | 40S RIBOSOMAL PROTEIN S26 (RPS26C) |
| AT1G22240
| PredictedAffinity Capture-MS | FSW = 0.0207
| Unknown | APUM8 (ARABIDOPSIS PUMILIO 8) RNA BINDING / BINDING |
| AT2G40430
| PredictedAffinity Capture-MS | FSW = 0.0901
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TUMOR SUPPRESSOR PROTEIN GLTSCR2 (INTERPROIPR011211) P60-LIKE (INTERPROIPR011687) HAS 601 BLAST HITS TO 544 PROTEINS IN 148 SPECIES ARCHAE - 0 BACTERIA - 22 METAZOA - 201 FUNGI - 103 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 243 (SOURCE NCBI BLINK) |
| AT3G51270
| PredictedAffinity Capture-MS | FSW = 0.0566
| Unknown | ATP BINDING / CATALYTIC/ PROTEIN SERINE/THREONINE KINASE |
| AT1G42440
| PredictedAffinity Capture-MS | FSW = 0.1888
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G067201) HAS 2447 BLAST HITS TO 1812 PROTEINS IN 205 SPECIES ARCHAE - 0 BACTERIA - 115 METAZOA - 903 FUNGI - 423 PLANTS - 100 VIRUSES - 53 OTHER EUKARYOTES - 853 (SOURCE NCBI BLINK) |
| AT4G16970
| PredictedSynthetic Lethality | FSW = 0.0189
| Unknown | ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT5G02530
| PredictedAffinity Capture-MS | FSW = 0.0199
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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