Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G63980 - ( SAL1 3(2)5-bisphosphate nucleotidase/ inositol or phosphatidylinositol phosphatase )

44 Proteins interacs with AT5G63980
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G26030

Predicted

Phenotypic Suppression

FSW = 0.0434

Class C:

plastid

FC1 (FERROCHELATASE 1) FERROCHELATASE
AT3G14420

Predicted

Phenotypic Enhancement

FSW = 0.0706

Class C:

plastid

(S)-2-HYDROXY-ACID OXIDASE PEROXISOMAL PUTATIVE / GLYCOLATE OXIDASE PUTATIVE / SHORT CHAIN ALPHA-HYDROXY ACID OXIDASE PUTATIVE
AT3G16950

Predicted

Affinity Capture-MS

FSW = 0.0153

Class C:

plastid

LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE
AT3G03920

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0732

Class C:

plastid

GAR1 RNA-BINDING REGION FAMILY PROTEIN
AT1G19660

Predicted

Synthetic Rescue

FSW = 0.0075

Class C:

plastid

WOUND-RESPONSIVE FAMILY PROTEIN
AT4G05090

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0399

Class C:

plastid

INOSITOL MONOPHOSPHATASE FAMILY PROTEIN
AT1G80030

Predicted

Affinity Capture-MS

FSW = 0.0242

Class C:

plastid

DNAJ HEAT SHOCK PROTEIN PUTATIVE
AT5G06290

Predicted

Synthetic Rescue

FSW = 0.0288

Class C:

plastid

2-CYS PRX B (2-CYSTEINE PEROXIREDOXIN B) ANTIOXIDANT/ PEROXIREDOXIN
AT1G10070

Predicted

Synthetic Rescue

FSW = 0.0423

Class C:

plastid

ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC
AT4G17730

Predicted

Affinity Capture-MS

FSW = 0.0375

Unknown

SYP23 (SYNTAXIN OF PLANTS 23) SNAP RECEPTOR
AT5G58140

Predicted

synthetic growth defect

Phenotypic Suppression

FSW = 0.0227

Unknown

PHOT2 (PHOTOTROPIN 2) FMN BINDING / BLUE LIGHT PHOTORECEPTOR/ KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G01840

Predicted

Affinity Capture-MS

FSW = 0.0830

Unknown

KCO5 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 5) OUTWARD RECTIFIER POTASSIUM CHANNEL
AT3G26590

Predicted

biochemical

FSW = 0.0361

Unknown

MATE EFFLUX FAMILY PROTEIN
AT1G14320

Predicted

Synthetic Rescue

FSW = 0.0229

Unknown

SAC52 (SUPPRESSOR OF ACAULIS 52) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G02500

Predicted

Synthetic Lethality

FSW = 0.0290

Unknown

SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1) METHIONINE ADENOSYLTRANSFERASE
AT5G52640

Predicted

Synthetic Lethality

FSW = 0.0052

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT5G40370

Predicted

Affinity Capture-MS

FSW = 0.0272

Unknown

GLUTAREDOXIN PUTATIVE
AT3G47960

Predicted

Affinity Capture-MS

FSW = 0.0541

Unknown

PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT5G43900

Predicted

Phenotypic Suppression

FSW = 0.0242

Unknown

MYA2 (ARABIDOPSIS MYOSIN 2) GTP-DEPENDENT PROTEIN BINDING / RAB GTPASE BINDING / MOTOR
AT2G36170Predicted

Affinity Capture-MS

FSW = 0.0693

Unknown

UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A)
AT4G13980

Predicted

Affinity Capture-MS

FSW = 0.0111

Unknown

AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR
AT3G44320

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Synthetic Rescue

Affinity Capture-Western

FSW = 0.1178

Unknown

NIT3 (NITRILASE 3) INDOLE-3-ACETONITRILE NITRILASE/ INDOLE-3-ACETONITRILE NITRILE HYDRATASE/ NITRILASE
AT4G17190

Predicted

Affinity Capture-MS

FSW = 0.0153

Unknown

FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE
AT4G27070

Predicted

Affinity Capture-MS

FSW = 0.0218

Unknown

TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2) TRYPTOPHAN SYNTHASE
AT2G01600

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0144

Unknown

EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN
AT2G03690

Predicted

Affinity Capture-MS

FSW = 0.1047

Unknown

COENZYME Q BIOSYNTHESIS COQ4 FAMILY PROTEIN / UBIQUINONE BIOSYNTHESIS COQ4 FAMILY PROTEIN
AT2G31260

Predicted

Synthetic Rescue

FSW = 0.0144

Unknown

APG9 (AUTOPHAGY 9)
AT2G47970

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Synthetic Rescue

Affinity Capture-Western

synthetic growth defect

FSW = 0.0601

Unknown

NPL4 FAMILY PROTEIN
AT3G12200

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0137

Unknown

ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT3G16840

Predicted

Affinity Capture-MS

FSW = 0.0126

Unknown

ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT3G59410

Predicted

Synthetic Rescue

FSW = 0.0140

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT5G13150

Predicted

Affinity Capture-MS

FSW = 0.0877

Unknown

ATEXO70C1 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN C1) PROTEIN BINDING
AT1G55060

Predicted

Affinity Capture-Western

FSW = 0.0233

Unknown

UBQ12 (UBIQUITIN 12) PROTEIN BINDING
AT1G55810

Predicted

interologs mapping

FSW = 0.0181

Unknown

URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE
AT3G25100

Predicted

Synthetic Lethality

FSW = 0.0091

Unknown

CDC45 (CELL DIVISION CYCLE 45)
AT4G00980

Predicted

Affinity Capture-MS

FSW = 0.0203

Unknown

ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN
AT4G14240

Predicted

biochemical

FSW = 0.0090

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF21 (INTERPROIPR002550) CYSTATHIONINE BETA-SYNTHASE CORE (INTERPROIPR000644) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CBS DOMAIN-CONTAINING PROTEIN-RELATED (TAIRAT4G142301) HAS 6770 BLAST HITS TO 6657 PROTEINS IN 1347 SPECIES ARCHAE - 62 BACTERIA - 4461 METAZOA - 254 FUNGI - 179 PLANTS - 121 VIRUSES - 0 OTHER EUKARYOTES - 1693 (SOURCE NCBI BLINK)
AT5G42190

Predicted

Synthetic Lethality

FSW = 0.0071

Unknown

ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G66620

Predicted

Affinity Capture-MS

FSW = 0.0800

Unknown

DAR6 (DA1-RELATED PROTEIN 6) ZINC ION BINDING
AT3G20630

Predicted

interaction prediction

FSW = 0.0466

Unknown

UBP14 (UBIQUITIN-SPECIFIC PROTEASE 14) UBIQUITIN-SPECIFIC PROTEASE
AT5G09290

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.2273

Unknown

3(2)5-BISPHOSPHATE NUCLEOTIDASE PUTATIVE / INOSITOL POLYPHOSPHATE 1-PHOSPHATASE PUTATIVE
AT5G54390

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0982

Unknown

AHL (ARABIDOPSIS HAL2-LIKE) 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE
AT5G64000

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.2000

Unknown

SAL2 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE
AT5G63990

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.2000

Unknown

3(2)5-BISPHOSPHATE NUCLEOTIDASE PUTATIVE / INOSITOL POLYPHOSPHATE 1-PHOSPHATASE PUTATIVE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454