Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G24240 - ( ribosomal protein L19 family protein )
38 Proteins interacs with AT1G24240Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G21280 | Predictedpull down | FSW = 0.0245
| Class C:plastid | SULA BINDING / CATALYTIC/ COENZYME BINDING |
AT2G36990 | Predictedpull down | FSW = 0.0465
| Class C:plastid | SIGF (RNA POLYMERASE SIGMA-SUBUNIT F) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ SIGMA FACTOR/ TRANSCRIPTION FACTOR |
AT4G31210 | Predictedpull down | FSW = 0.1420
| Class C:plastid | DNA TOPOISOMERASE FAMILY PROTEIN |
AT5G23140 | Predictedpull down | FSW = 0.0711
| Class C:plastid | NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7) SERINE-TYPE ENDOPEPTIDASE |
AT2G04842 | Predictedpull down | FSW = 0.0496
| Class C:plastid | EMB2761 (EMBRYO DEFECTIVE 2761) ATP BINDING / AMINOACYL-TRNA LIGASE/ LIGASE FORMING AMINOACYL-TRNA AND RELATED COMPOUNDS / NUCLEOTIDE BINDING / THREONINE-TRNA LIGASE |
AT4G30690 | Predictedpull down | FSW = 0.0372
| Class C:plastid | TRANSLATION INITIATION FACTOR 3 (IF-3) FAMILY PROTEIN |
AT2G19870 | Predictedpull down | FSW = 0.0408
| Class C:plastid | TRNA/RRNA METHYLTRANSFERASE (SPOU) FAMILY PROTEIN |
AT2G22360 | Predictedpull down | FSW = 0.1512
| Class C:plastid | DNAJ HEAT SHOCK FAMILY PROTEIN |
AT5G11750 | PredictedPhylogenetic profile method | FSW = 0.0976
| Class C:plastid | RIBOSOMAL PROTEIN L19 FAMILY PROTEIN |
AT2G22230 | Predictedpull down | FSW = 0.0296
| Class C:plastid | BETA-HYDROXYACYL-ACP DEHYDRATASE PUTATIVE |
AT3G18680 | Predictedpull down | FSW = 0.0821
| Class C:plastid | ASPARTATE/GLUTAMATE/URIDYLATE KINASE FAMILY PROTEIN |
AT4G20960 | Predictedpull down | FSW = 0.0230
| Class C:plastid | CYTIDINE/DEOXYCYTIDYLATE DEAMINASE FAMILY PROTEIN |
AT1G32990 | Predictedpull down | FSW = 0.2268
| Class C:plastid | PRPL11 (PLASTID RIBOSOMAL PROTEIN L11) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G78630 | Predictedpull down | FSW = 0.4162
| Class C:plastid | EMB1473 (EMBRYO DEFECTIVE 1473) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G02260 | Predictedpull down | FSW = 0.0926
| Class C:plastid | RSH1 (RELA-SPOT HOMOLOG 1) CATALYTIC |
ATCG00180 | Predictedpull down | FSW = 0.2315
| Class C:plastid | RNA POLYMERASE BETA SUBUNIT-1 |
ATCG00740 | Predictedpull down | FSW = 0.1458
| Class C:plastid | RNA POLYMERASE ALPHA SUBUNIT |
AT4G37910 | Predictedpull down | FSW = 0.0813
| Unknown | MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING |
AT4G38680 | Predictedpull down | FSW = 0.0939
| Unknown | GRP2 (GLYCINE RICH PROTEIN 2) DOUBLE-STRANDED DNA BINDING / MRNA BINDING / NUCLEIC ACID BINDING / SINGLE-STRANDED DNA BINDING |
AT2G41790 | Predictedpull down | FSW = 0.0244
| Unknown | PEPTIDASE M16 FAMILY PROTEIN / INSULINASE FAMILY PROTEIN |
AT4G11060 | Predictedpull down | FSW = 0.0970
| Unknown | MTSSB (MITOCHONDRIALLY TARGETED SINGLE-STRANDED DNA BINDING PROTEIN) SINGLE-STRANDED DNA BINDING |
AT2G45240 | Predictedpull down | FSW = 0.0532
| Unknown | MAP1A (METHIONINE AMINOPEPTIDASE 1A) AMINOPEPTIDASE/ METALLOEXOPEPTIDASE |
AT2G30920 | Predictedpull down | FSW = 0.0539
| Unknown | ATCOQ3 (ARABDIOPSIS THALIANA COENZYME Q 3) HEXAPRENYLDIHYDROXYBENZOATE METHYLTRANSFERASE/ POLYPRENYLDIHYDROXYBENZOATE METHYLTRANSFERASE |
AT1G79500 | Predictedpull down | FSW = 0.0232
| Unknown | 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE / PHOSPHO-2-DEHYDRO-3-DEOXYOCTONATE ALDOLASE / 3-DEOXY-D-MANNO-OCTULOSONIC ACID 8-PHOSPHATE SYNTHETASE (KDSA) |
AT2G18230 | Predictedpull down | FSW = 0.0229
| Unknown | ATPPA2 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 2) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT1G01290 | Predictedpull down | FSW = 0.0571
| Unknown | CNX3 (COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 3) CATALYTIC |
AT1G26550 | Predictedpull down | FSW = 0.0880
| Unknown | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE PPIC-TYPE FAMILY PROTEIN |
AT1G73740 | Predictedpull down | FSW = 0.1263
| Unknown | GLYCOSYL TRANSFERASE FAMILY 28 PROTEIN |
AT2G04560 | Predictedpull down | FSW = 0.0876
| Unknown | TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G22310 | Predictedpull down | FSW = 0.1561
| Unknown | PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1) ATP-DEPENDENT HELICASE/ DNA BINDING / RNA BINDING |
AT4G18460 | Predictedpull down | FSW = 0.0239
| Unknown | D-TYR-TRNA(TYR) DEACYLASE FAMILY PROTEIN |
AT4G21220 | Predictedpull down | FSW = 0.0762
| Unknown | BACTERIAL TRANSFERASE HEXAPEPTIDE REPEAT-CONTAINING PROTEIN |
AT4G26780 | Predictedpull down | FSW = 0.0505
| Unknown | AR192 ADENYL-NUCLEOTIDE EXCHANGE FACTOR/ CHAPERONE BINDING / PROTEIN BINDING / PROTEIN HOMODIMERIZATION |
AT4G31150 | Predictedpull down | FSW = 0.0476
| Unknown | ENDONUCLEASE V FAMILY PROTEIN |
AT4G36020 | Predictedpull down | FSW = 0.0804
| Unknown | CSDP1 (COLD SHOCK DOMAIN PROTEIN 1) RNA BINDING / DOUBLE-STRANDED DNA BINDING / NUCLEIC ACID BINDING / SINGLE-STRANDED DNA BINDING |
AT5G49970 | Predictedpull down | FSW = 0.0035
| Unknown | ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE |
AT5G51140 | Predictedpull down | FSW = 0.1227
| Unknown | PSEUDOURIDINE SYNTHASE FAMILY PROTEIN |
AT5G64650 | Predictedpull down | FSW = 0.1403
| Unknown | RIBOSOMAL PROTEIN L17 FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454