Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G24240 - ( ribosomal protein L19 family protein )

38 Proteins interacs with AT1G24240
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G21280

Predicted

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FSW = 0.0245

Class C:

plastid

SULA BINDING / CATALYTIC/ COENZYME BINDING
AT2G36990

Predicted

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FSW = 0.0465

Class C:

plastid

SIGF (RNA POLYMERASE SIGMA-SUBUNIT F) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ SIGMA FACTOR/ TRANSCRIPTION FACTOR
AT4G31210Predicted

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FSW = 0.1420

Class C:

plastid

DNA TOPOISOMERASE FAMILY PROTEIN
AT5G23140

Predicted

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FSW = 0.0711

Class C:

plastid

NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7) SERINE-TYPE ENDOPEPTIDASE
AT2G04842

Predicted

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FSW = 0.0496

Class C:

plastid

EMB2761 (EMBRYO DEFECTIVE 2761) ATP BINDING / AMINOACYL-TRNA LIGASE/ LIGASE FORMING AMINOACYL-TRNA AND RELATED COMPOUNDS / NUCLEOTIDE BINDING / THREONINE-TRNA LIGASE
AT4G30690

Predicted

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FSW = 0.0372

Class C:

plastid

TRANSLATION INITIATION FACTOR 3 (IF-3) FAMILY PROTEIN
AT2G19870

Predicted

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FSW = 0.0408

Class C:

plastid

TRNA/RRNA METHYLTRANSFERASE (SPOU) FAMILY PROTEIN
AT2G22360

Predicted

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FSW = 0.1512

Class C:

plastid

DNAJ HEAT SHOCK FAMILY PROTEIN
AT5G11750

Predicted

Phylogenetic profile method

FSW = 0.0976

Class C:

plastid

RIBOSOMAL PROTEIN L19 FAMILY PROTEIN
AT2G22230

Predicted

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FSW = 0.0296

Class C:

plastid

BETA-HYDROXYACYL-ACP DEHYDRATASE PUTATIVE
AT3G18680

Predicted

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FSW = 0.0821

Class C:

plastid

ASPARTATE/GLUTAMATE/URIDYLATE KINASE FAMILY PROTEIN
AT4G20960

Predicted

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FSW = 0.0230

Class C:

plastid

CYTIDINE/DEOXYCYTIDYLATE DEAMINASE FAMILY PROTEIN
AT1G32990

Predicted

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FSW = 0.2268

Class C:

plastid

PRPL11 (PLASTID RIBOSOMAL PROTEIN L11) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G78630

Predicted

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FSW = 0.4162

Class C:

plastid

EMB1473 (EMBRYO DEFECTIVE 1473) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G02260

Predicted

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FSW = 0.0926

Class C:

plastid

RSH1 (RELA-SPOT HOMOLOG 1) CATALYTIC
ATCG00180Predicted

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FSW = 0.2315

Class C:

plastid

RNA POLYMERASE BETA SUBUNIT-1
ATCG00740Predicted

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FSW = 0.1458

Class C:

plastid

RNA POLYMERASE ALPHA SUBUNIT
AT4G37910

Predicted

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FSW = 0.0813

Unknown

MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING
AT4G38680

Predicted

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FSW = 0.0939

Unknown

GRP2 (GLYCINE RICH PROTEIN 2) DOUBLE-STRANDED DNA BINDING / MRNA BINDING / NUCLEIC ACID BINDING / SINGLE-STRANDED DNA BINDING
AT2G41790

Predicted

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FSW = 0.0244

Unknown

PEPTIDASE M16 FAMILY PROTEIN / INSULINASE FAMILY PROTEIN
AT4G11060

Predicted

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FSW = 0.0970

Unknown

MTSSB (MITOCHONDRIALLY TARGETED SINGLE-STRANDED DNA BINDING PROTEIN) SINGLE-STRANDED DNA BINDING
AT2G45240

Predicted

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FSW = 0.0532

Unknown

MAP1A (METHIONINE AMINOPEPTIDASE 1A) AMINOPEPTIDASE/ METALLOEXOPEPTIDASE
AT2G30920

Predicted

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FSW = 0.0539

Unknown

ATCOQ3 (ARABDIOPSIS THALIANA COENZYME Q 3) HEXAPRENYLDIHYDROXYBENZOATE METHYLTRANSFERASE/ POLYPRENYLDIHYDROXYBENZOATE METHYLTRANSFERASE
AT1G79500

Predicted

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FSW = 0.0232

Unknown

2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE / PHOSPHO-2-DEHYDRO-3-DEOXYOCTONATE ALDOLASE / 3-DEOXY-D-MANNO-OCTULOSONIC ACID 8-PHOSPHATE SYNTHETASE (KDSA)
AT2G18230

Predicted

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FSW = 0.0229

Unknown

ATPPA2 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 2) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE
AT1G01290

Predicted

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FSW = 0.0571

Unknown

CNX3 (COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 3) CATALYTIC
AT1G26550

Predicted

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FSW = 0.0880

Unknown

PEPTIDYL-PROLYL CIS-TRANS ISOMERASE PPIC-TYPE FAMILY PROTEIN
AT1G73740

Predicted

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FSW = 0.1263

Unknown

GLYCOSYL TRANSFERASE FAMILY 28 PROTEIN
AT2G04560Predicted

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FSW = 0.0876

Unknown

TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT3G22310

Predicted

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FSW = 0.1561

Unknown

PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1) ATP-DEPENDENT HELICASE/ DNA BINDING / RNA BINDING
AT4G18460

Predicted

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FSW = 0.0239

Unknown

D-TYR-TRNA(TYR) DEACYLASE FAMILY PROTEIN
AT4G21220

Predicted

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FSW = 0.0762

Unknown

BACTERIAL TRANSFERASE HEXAPEPTIDE REPEAT-CONTAINING PROTEIN
AT4G26780

Predicted

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FSW = 0.0505

Unknown

AR192 ADENYL-NUCLEOTIDE EXCHANGE FACTOR/ CHAPERONE BINDING / PROTEIN BINDING / PROTEIN HOMODIMERIZATION
AT4G31150

Predicted

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FSW = 0.0476

Unknown

ENDONUCLEASE V FAMILY PROTEIN
AT4G36020

Predicted

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FSW = 0.0804

Unknown

CSDP1 (COLD SHOCK DOMAIN PROTEIN 1) RNA BINDING / DOUBLE-STRANDED DNA BINDING / NUCLEIC ACID BINDING / SINGLE-STRANDED DNA BINDING
AT5G49970

Predicted

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FSW = 0.0035

Unknown

ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE
AT5G51140

Predicted

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FSW = 0.1227

Unknown

PSEUDOURIDINE SYNTHASE FAMILY PROTEIN
AT5G64650

Predicted

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FSW = 0.1403

Unknown

RIBOSOMAL PROTEIN L17 FAMILY PROTEIN

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454