Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G20960 - ( cytidine/deoxycytidylate deaminase family protein )

14 Proteins interacs with AT4G20960
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G33210

Predicted

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FSW = 0.0109

Class C:

plastid

 HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING
AT4G01310

Predicted

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FSW = 0.0500

Class C:

plastid

 RIBOSOMAL PROTEIN L5 FAMILY PROTEIN
AT5G16390

Predicted

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FSW = 0.0972

Class C:

plastid

 CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1) ACETYL-COA CARBOXYLASE/ BIOTIN BINDING
AT1G17220

Predicted

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FSW = 0.0909

Class C:

plastid

 FUG1 (FU-GAERI1) TRANSLATION INITIATION FACTOR
AT1G24240

Predicted

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FSW = 0.0230

Class C:

plastid

 RIBOSOMAL PROTEIN L19 FAMILY PROTEIN
AT2G43030

Predicted

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FSW = 0.0521

Class C:

plastid

 RIBOSOMAL PROTEIN L3 FAMILY PROTEIN
AT5G35360

Predicted

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FSW = 0.2381

Class C:

plastid

 CAC2 ACETYL-COA CARBOXYLASE/ BIOTIN CARBOXYLASE
ATCG00190Predicted

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FSW = 0.0455

Class C:

plastid

 CHLOROPLAST DNA-DEPENDENT RNA POLYMERASE B SUBUNIT THE TRANSCRIPTION OF THIS GENE IS REGULATED BY A NUCLEAR ENCODED RNA POLYMERASE THIS GENE HAS BEEN TRANSFERRED TO MITOCHONDRIAL GENOME DURING CRUCIFER EVOLUTION
ATCG00160Predicted

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FSW = 0.0431

Class C:

plastid

 CHLOROPLAST RIBOSOMAL PROTEIN S2
ATCG00380Predicted

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FSW = 0.0461

Class C:

plastid

 CHLOROPLAST ENCODED RIBOSOMAL PROTEIN S4
ATCG00500Predicted

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FSW = 0.1955

Class C:

plastid

 ENCODES THE CARBOXYTRANSFERASE BETA SUBUNIT OF THE ACETYL-COA CARBOXYLASE (ACCASE) COMPLEX IN PLASTIDS THIS COMPLEX CATALYZES THE CARBOXYLATION OF ACETYL-COA TO PRODUCE MALONYL-COA THE FIRST COMMITTED STEP IN FATTY ACID SYNTHESIS
ATCG01240Predicted

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FSW = 0.0649

Class C:

plastid

 30S CHLOROPLAST RIBOSOMAL PROTEIN S7
AT4G30930

Predicted

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FSW = 0.0606

Unknown

 NFD1 (NUCLEAR FUSION DEFECTIVE 1) RNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G20060

Predicted

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FSW = 0.1294

Unknown

 RIBOSOMAL PROTEIN L4 FAMILY PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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