Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT2G04842 - ( EMB2761 (EMBRYO DEFECTIVE 2761) ATP binding / aminoacyl-tRNA ligase/ ligase forming aminoacyl-tRNA and related compounds / nucleotide binding / threonine-tRNA ligase )
25 Proteins interacs with AT2G04842| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT2G33800
   | Predictedpull down | FSW = 0.2154
| Class C:plastid | RIBOSOMAL PROTEIN S5 FAMILY PROTEIN |
| AT3G63490
| Predictedpull down | FSW = 0.0991
| Class C:plastid | RIBOSOMAL PROTEIN L1 FAMILY PROTEIN |
| AT3G17170
| Predictedpull down | FSW = 0.0736
| Class C:plastid | RFC3 (REGULATOR OF FATTY-ACID COMPOSITION 3) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G44890
| Predictedpull down | FSW = 0.0872
| Class C:plastid | RPL9 (RIBOSOMAL PROTEIN L9) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT5G30510
| Predictedpull down | FSW = 0.1125
| Class C:plastid | RPS1 (RIBOSOMAL PROTEIN S1) RNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT5G61410
| Predictedpull down | FSW = 0.1016
| Class C:plastid | RPE CATALYTIC/ RIBULOSE-PHOSPHATE 3-EPIMERASE |
| AT1G22170
| Predictedpull down | FSW = 0.0147
| Class C:plastid | PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE FAMILY PROTEIN |
| AT3G13120
| Predictedpull down | FSW = 0.0282
| Class C:plastid | 30S RIBOSOMAL PROTEIN S10 CHLOROPLAST PUTATIVE |
| AT5G14320
| Predictedpull down | FSW = 0.0643
| Class C:plastid | 30S RIBOSOMAL PROTEIN S13 CHLOROPLAST (CS13) |
| AT1G24240
| Predictedpull down | FSW = 0.0496
| Class C:plastid | RIBOSOMAL PROTEIN L19 FAMILY PROTEIN |
| AT1G78630
| Predictedpull down | FSW = 0.1361
| Class C:plastid | EMB1473 (EMBRYO DEFECTIVE 1473) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT2G43030
| Predictedpull down | FSW = 0.0225
| Class C:plastid | RIBOSOMAL PROTEIN L3 FAMILY PROTEIN |
| ATCG00160 | Predictedpull down | FSW = 0.0633
| Class C:plastid | CHLOROPLAST RIBOSOMAL PROTEIN S2 |
| ATCG00330 | Predictedpull down | FSW = 0.0688
| Class C:plastid | 30S CHLOROPLAST RIBOSOMAL PROTEIN S14 |
| ATCG00800 | Predictedpull down | FSW = 0.0504
| Class C:plastid | ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN S3 A CONSTITUENT OF THE SMALL SUBUNIT OF THE RIBOSOMAL COMPLEX |
| ATCG00810 | Predictedpull down | FSW = 0.0112
| Class C:plastid | ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L22 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX |
| ATCG01240 | Predictedpull down | FSW = 0.0577
| Class C:plastid | 30S CHLOROPLAST RIBOSOMAL PROTEIN S7 |
| AT4G37910
| Predictedpull down | FSW = 0.0948
| Class C:mitochondrion | MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING |
| AT5G26830
| PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.0301
| Class C:mitochondrion | THREONYL-TRNA SYNTHETASE / THREONINE--TRNA LIGASE (THRRS) |
| AT2G36530
| Predictedpull down | FSW = 0.0652
| Unknown | LOS2 COPPER ION BINDING / PHOSPHOPYRUVATE HYDRATASE |
| AT1G31690
| Predictedpull down | FSW = 0.1143
| Unknown | AMINE OXIDASE/ COPPER ION BINDING / QUINONE BINDING |
| AT2G25870
| Predictedpull down | FSW = 0.0645
| Unknown | HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN |
| AT4G28020
| Predictedpull down | FSW = 0.0306
| Unknown | UNKNOWN PROTEIN |
| AT3G29340
| PredictedGene fusion method | FSW = 0.1379
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
| AT1G51965
| PredictedGene fusion method | FSW = 0.0645
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
AtPIN is built and maintained by the System and Integrative Biology Laboratory of CBMEG / UNICAMPTAIR | Report a bug | Roadmap | This is AtPIN version 2.6.71
This page takes 0.368 seconds to be build.
This page takes 0.368 seconds to be build.