Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G17170 - ( RFC3 (REGULATOR OF FATTY-ACID COMPOSITION 3) structural constituent of ribosome )

24 Proteins interacs with AT3G17170
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G36990

Predicted

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FSW = 0.1366

Class C:

plastid

 SIGF (RNA POLYMERASE SIGMA-SUBUNIT F) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ SIGMA FACTOR/ TRANSCRIPTION FACTOR
AT2G33800

Predicted

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FSW = 0.3173

Class C:

plastid

 RIBOSOMAL PROTEIN S5 FAMILY PROTEIN
AT5G23140

Predicted

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FSW = 0.0513

Class C:

plastid

 NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7) SERINE-TYPE ENDOPEPTIDASE
AT1G56190

Predicted

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FSW = 0.0631

Class C:

plastid

 PHOSPHOGLYCERATE KINASE PUTATIVE
AT2G04842

Predicted

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FSW = 0.0736

Class C:

plastid

 EMB2761 (EMBRYO DEFECTIVE 2761) ATP BINDING / AMINOACYL-TRNA LIGASE/ LIGASE FORMING AMINOACYL-TRNA AND RELATED COMPOUNDS / NUCLEOTIDE BINDING / THREONINE-TRNA LIGASE
AT4G30690

Predicted

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FSW = 0.0813

Class C:

plastid

 TRANSLATION INITIATION FACTOR 3 (IF-3) FAMILY PROTEIN
AT2G04270

Predicted

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FSW = 0.1494

Class C:

plastid

 RNEE/G (RNASE E/G-LIKE) ENDORIBONUCLEASE
AT2G22360

Predicted

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FSW = 0.1201

Class C:

plastid

 DNAJ HEAT SHOCK FAMILY PROTEIN
AT5G66470

Predicted

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FSW = 0.0756

Class C:

plastid

 GTP BINDING / RNA BINDING
AT5G08650

Predicted

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FSW = 0.0643

Class C:

plastid

 GTP-BINDING PROTEIN LEPA PUTATIVE
AT4G01310

Predicted

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FSW = 0.2072

Class C:

plastid

 RIBOSOMAL PROTEIN L5 FAMILY PROTEIN
AT4G02260

Predicted

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FSW = 0.1032

Class C:

plastid

 RSH1 (RELA-SPOT HOMOLOG 1) CATALYTIC
ATCG00190Predicted

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FSW = 0.1276

Class C:

plastid

 CHLOROPLAST DNA-DEPENDENT RNA POLYMERASE B SUBUNIT THE TRANSCRIPTION OF THIS GENE IS REGULATED BY A NUCLEAR ENCODED RNA POLYMERASE THIS GENE HAS BEEN TRANSFERRED TO MITOCHONDRIAL GENOME DURING CRUCIFER EVOLUTION
ATCG00740Predicted

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FSW = 0.1733

Class C:

plastid

 RNA POLYMERASE ALPHA SUBUNIT
AT4G37910

Predicted

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FSW = 0.0575

Unknown

 MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING
AT5G52640

Predicted

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FSW = 0.0018

Unknown

 ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT1G14460

Predicted

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FSW = 0.1286

Unknown

 DNA POLYMERASE-RELATED
AT4G38680

Predicted

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FSW = 0.1615

Unknown

 GRP2 (GLYCINE RICH PROTEIN 2) DOUBLE-STRANDED DNA BINDING / MRNA BINDING / NUCLEIC ACID BINDING / SINGLE-STRANDED DNA BINDING
AT3G09210

Predicted

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FSW = 0.2443

Unknown

 PTAC13 (PLASTID TRANSCRIPTIONALLY ACTIVE13) TRANSCRIPTION ELONGATION REGULATOR
AT1G65290

Predicted

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FSW = 0.0690

Unknown

 MTACP2 (MITOCHONDRIAL ACYL CARRIER PROTEIN 2) ACYL CARRIER/ METAL ION BINDING
AT2G17510

Predicted

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FSW = 0.1158

Unknown

 EMB2763 (EMBRYO DEFECTIVE 2763) RNA BINDING / RIBONUCLEASE
AT3G22310

Predicted

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FSW = 0.2168

Unknown

 PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1) ATP-DEPENDENT HELICASE/ DNA BINDING / RNA BINDING
AT4G31150

Predicted

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FSW = 0.1162

Unknown

 ENDONUCLEASE V FAMILY PROTEIN
AT5G51140

Predicted

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FSW = 0.1733

Unknown

 PSEUDOURIDINE SYNTHASE FAMILY PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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