Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G20000 - ( TOM40 P-P-bond-hydrolysis-driven protein transmembrane transporter/ voltage-gated anion channel )
22 Proteins interacs with AT3G20000| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT5G40930
   | Experimentaltwo hybrid | FSW = 0.1735
| Class A:vacuolemitochondrionClass B:unclearClass D:plastid (p = 0.78)mitochondrion (p = 0.82) | TOM20-4 (TRANSLOCASE OF OUTER MEMBRANE 20-4) P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER |
| AT5G09420
| Experimentaltwo hybrid | FSW = 0.1109
| Class A:unclearmitochondrionClass B:vacuoleplastidClass D:plastid (p = 0.78)mitochondrion (p = 0.82) | ATTOC64-V (ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V) AMIDASE/ BINDING / CARBON-NITROGEN LIGASE WITH GLUTAMINE AS AMIDO-N-DONOR |
| AT1G27390
| Experimentaltwo hybrid | FSW = 0.1177
| Class A:unclearmitochondrionClass B:vacuoleClass D:mitochondrion (p = 0.82) | TOM20-2 (TRANSLOCASE OUTER MEMBRANE 20-2) P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER/ METAL ION BINDING |
| AT2G19080
| Experimentaltwo hybrid | FSW = 0.1394
| Class A:unclearmitochondrionClass B:vacuole | METAXIN-RELATED |
| AT3G27080
| Experimentaltwo hybrid | FSW = 0.0664
| Class A:mitochondrionClass B:vacuoleunclearClass D:plastid (p = 0.78)mitochondrion (p = 0.82) | TOM20-3 (TRANSLOCASE OF OUTER MEMBRANE 20 KDA SUBUNIT 3) P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER |
| AT5G15090
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternSynthetic Lethality | FSW = 0.0827
| Class C:vacuoleunclearmitochondrion | VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) VOLTAGE-GATED ANION CHANNEL |
| AT3G09200
| Predictedinterologs mapping | FSW = 0.0242
| Class C:vacuole | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B) |
| AT4G29260
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2797
| Class C:vacuole | ACID PHOSPHATASE CLASS B FAMILY PROTEIN |
| AT2G20510
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1210
| Class C:mitochondrion | ATTIM44-1 PROTEIN-TRANSMEMBRANE TRANSPORTING ATPASE |
| AT3G60510
| PredictedAffinity Capture-MS | FSW = 0.0291
| Class C:mitochondrion | ENOYL-COA HYDRATASE/ISOMERASE FAMILY PROTEIN |
| AT1G10060
| PredictedAffinity Capture-MS | FSW = 0.0201
| Class C:mitochondrion | BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 1 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 1 (BCAT1) |
| AT1G02780
| PredictedAffinity Capture-Westerninterologs mappinginterologs mappinginterologs mappingAffinity Capture-Westerntwo hybridReconstituted Complex | FSW = 0.0788
| Unknown | EMB2386 (EMBRYO DEFECTIVE 2386) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT2G44860
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-Western | FSW = 0.1298
| Unknown | 60S RIBOSOMAL PROTEIN L24 PUTATIVE |
| AT5G50270
| Predictedtwo hybrid | FSW = 0.0334
| Unknown | F-BOX FAMILY PROTEIN |
| AT4G32640
| Predictedtwo hybrid | FSW = 0.0426
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
| AT5G47480
| Predictedtwo hybrid | FSW = 0.0400
| Unknown | UNKNOWN PROTEIN |
| AT1G25500
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.2420
| Unknown | CHOLINE TRANSPORTER-RELATED |
| AT1G34580
| Predictedinterologs mapping | FSW = 0.0144
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
| AT1G33040
| PredictedSynthetic Lethality | FSW = 0.0266
| Unknown | NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5) |
| AT5G01670
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.1188
| Unknown | ALDOSE REDUCTASE PUTATIVE |
| AT5G01430
| Predictedinterologs mapping | FSW = 0.0420
| Unknown | GOT1-LIKE FAMILY PROTEIN |
| AT5G06600
| Predictedinterologs mapping | FSW = 0.0671
| Unknown | UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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