Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT1G79820 - ( SGB1 (SUPPRESSOR OF G PROTEIN BETA1) carbohydrate transmembrane transporter/ sugarhydrogen symporter )
37 Proteins interacs with AT1G79820Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G15090 | PredictedAffinity Capture-MS | FSW = 0.0117
| Unknown | VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) VOLTAGE-GATED ANION CHANNEL |
AT2G48020 | PredictedPhylogenetic profile method | FSW = 0.5975
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT1G11260 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3585
| Unknown | STP1 (SUGAR TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G26590 | PredictedAffinity Capture-MS | FSW = 0.0095
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT3G03090 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.6938
| Unknown | ATVGT1 (ARABIDOPSIS THALIANA VACUOLAR GLUCOSE TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ FRUCTOSE TRANSMEMBRANE TRANSPORTER/ GLUCOSE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G75220 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.6361
| Unknown | INTEGRAL MEMBRANE PROTEIN PUTATIVE |
AT1G19450 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.6361
| Unknown | INTEGRAL MEMBRANE PROTEIN PUTATIVE / SUGAR TRANSPORTER FAMILY PROTEIN |
AT5G26030 | PredictedAffinity Capture-MS | FSW = 0.0242
| Unknown | FC1 (FERROCHELATASE 1) FERROCHELATASE |
AT5G59250 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.6520
| Unknown | SUGAR TRANSPORTER FAMILY PROTEIN |
AT1G02780 | PredictedAffinity Capture-MS | FSW = 0.0068
| Unknown | EMB2386 (EMBRYO DEFECTIVE 2386) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G18830 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.6636
| Unknown | ATPLT5 (POLYOL TRANSPORTER 5) D-RIBOSE TRANSMEMBRANE TRANSPORTER/ D-XYLOSE TRANSMEMBRANE TRANSPORTER/ CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ GALACTOSE TRANSMEMBRANE TRANSPORTER/ GLUCOSE TRANSMEMBRANE TRANSPORTER/ GLYCEROL TRANSMEMBRANE TRANSPORTER/ MANN |
AT1G50310 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0783
| Unknown | STP9 (SUGAR TRANSPORTER 9) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G23270 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.6545
| Unknown | STP11 (SUGAR TRANSPORTER 11) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G64230 | PredictedPhenotypic Enhancement | FSW = 0.0151
| Unknown | UBIQUITIN-CONJUGATING ENZYME PUTATIVE |
AT3G53170 | PredictedGene fusion method | FSW = 0.0802
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN GLUTAMINE BIOSYNTHETIC PROCESS LOCATED IN NUCLEOLUS EXPRESSED IN 9 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PENTATRICOPEPTIDE REPEAT (INTERPROIPR002885) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN (TAIRAT5G487301) HAS 17188 BLAST HITS TO 5538 PROTEINS IN 167 SPECIES ARCHAE - 1 BACTERIA - 16 METAZOA - 307 FUNGI - 211 PLANTS - 16025 VIRUSES - 0 OTHER EUKARYOTES - 628 (SOURCE NCBI BLINK) |
AT1G04980 | PredictedGene fusion method | FSW = 0.0508
| Unknown | ATPDIL2-2 (PDI-LIKE 2-2) PROTEIN DISULFIDE ISOMERASE |
AT3G05150 | PredictedPhylogenetic profile method | FSW = 0.6585
| Unknown | SUGAR TRANSPORTER FAMILY PROTEIN |
AT1G66520 | PredictedAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.1107
| Unknown | PDE194 (PIGMENT DEFECTIVE 194) CATALYTIC/ FORMYLTETRAHYDROFOLATE DEFORMYLASE/ HYDROXYMETHYL- FORMYL- AND RELATED TRANSFERASE |
AT1G78770 | PredictedPhenotypic Suppression | FSW = 0.0084
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT2G16950 | Predictedtwo hybridAffinity Capture-MS | FSW = 0.0091
| Unknown | TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER |
AT3G18850 | PredictedAffinity Capture-MS | FSW = 0.0033
| Unknown | LPAT5 ACYLTRANSFERASE |
AT4G14000 | PredictedAffinity Capture-MS | FSW = 0.0069
| Unknown | UNKNOWN PROTEIN |
AT1G80510 | PredictedAffinity Capture-MS | FSW = 0.0183
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT1G05030 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.6424
| Unknown | HEXOSE TRANSPORTER PUTATIVE |
AT3G19940 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2545
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT4G36670 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.6327
| Unknown | MANNITOL TRANSPORTER PUTATIVE |
AT1G08930 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.6102
| Unknown | ERD6 (EARLY RESPONSE TO DEHYDRATION 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGAR TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT4G21480 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0980
| Unknown | CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT2G20780 | PredictedPhylogenetic profile method | FSW = 0.6644
| Unknown | MANNITOL TRANSPORTER PUTATIVE |
AT4G04750 | PredictedPhylogenetic profile method | FSW = 0.5980
| Unknown | CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G05165 | PredictedPhylogenetic profile method | FSW = 0.6229
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT1G54730 | PredictedPhylogenetic profile method | FSW = 0.5980
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT2G18480 | PredictedPhylogenetic profile method | FSW = 0.6453
| Unknown | MANNITOL TRANSPORTER PUTATIVE |
AT5G18840 | PredictedPhylogenetic profile method | FSW = 0.5862
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT4G16480 | PredictedPhylogenetic profile method | FSW = 0.2420
| Unknown | INT4 (INOSITOL TRANSPORTER 4) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MYO-INOSITOLHYDROGEN SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G05160 | PredictedPhylogenetic profile method | FSW = 0.6500
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT4G33260 | PredictedGene fusion method | FSW = 0.0802
| Unknown | CDC202 SIGNAL TRANSDUCER |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454