Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G53170 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN glutamine biosynthetic process LOCATED IN nucleolus EXPRESSED IN 9 plant structures EXPRESSED DURING 6 growth stages CONTAINS InterPro DOMAIN/s Pentatricopeptide repeat (InterProIPR002885) BEST Arabidopsis thaliana protein match is pentatricopeptide (PPR) repeat-containing protein (TAIRAT5G487301) Has 17188 Blast hits to 5538 proteins in 167 species Archae - 1 Bacteria - 16 Metazoa - 307 Fungi - 211 Plants - 16025 Viruses - 0 Other Eukaryotes - 628 (source NCBI BLink) )

14 Proteins interacs with AT3G53170
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G75780

Predicted

Gene fusion method

FSW = 0.1871

Unknown

TUB1 GTP BINDING / GTPASE/ STRUCTURAL MOLECULE
AT1G42970

Predicted

Gene fusion method

FSW = 0.1498

Unknown

GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT) GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (NADP+)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
AT4G39960

Predicted

Gene fusion method

FSW = 0.2105

Unknown

DNAJ HEAT SHOCK FAMILY PROTEIN
AT1G04980

Predicted

Gene fusion method

FSW = 0.6759

Unknown

ATPDIL2-2 (PDI-LIKE 2-2) PROTEIN DISULFIDE ISOMERASE
AT4G28410Predicted

Gene fusion method

FSW = 0.2941

Unknown

AMINOTRANSFERASE-RELATED
AT4G26200

Predicted

Gene fusion method

FSW = 0.2632

Unknown

ACS7 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE
AT5G24940

Predicted

Gene fusion method

FSW = 0.0627

Unknown

PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE
AT1G20490

Predicted

Gene fusion method

FSW = 0.1390

Unknown

AMP-DEPENDENT SYNTHETASE AND LIGASE FAMILY PROTEIN
AT4G33260

Predicted

Gene fusion method

FSW = 0.6525

Unknown

CDC202 SIGNAL TRANSDUCER
AT3G45100

Predicted

Gene fusion method

FSW = 0.0933

Unknown

SETH2 TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT1G79820

Predicted

Gene fusion method

FSW = 0.0802

Unknown

SGB1 (SUPPRESSOR OF G PROTEIN BETA1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT1G01140

Predicted

Gene fusion method

FSW = 0.1684

Unknown

CIPK9 (CBL-INTERACTING PROTEIN KINASE 9) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT2G30940

Predicted

Gene fusion method

FSW = 0.1498

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT1G78070

Predicted

Gene fusion method

FSW = 0.1498

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CUL4 RING UBIQUITIN LIGASE COMPLEX EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S WD40 REPEAT-LIKE (INTERPROIPR011046) WD40 REPEAT REGION (INTERPROIPR017986) WD40/YVTN REPEAT-LIKE (INTERPROIPR015943) WD40 REPEAT (INTERPROIPR001680) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS WD-40 REPEAT FAMILY PROTEIN (TAIRAT1G360701) HAS 110 BLAST HITS TO 110 PROTEINS IN 30 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 0 FUNGI - 28 PLANTS - 80 VIRUSES - 0 OTHER EUKARYOTES - 2 (SOURCE NCBI BLINK)

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454