Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT1G06230 - ( GTE4 (GLOBAL TRANSCRIPTION FACTOR GROUP E 4) DNA binding )
26 Proteins interacs with AT1G06230Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G44680 | PredictedAffinity Capture-MS | FSW = 0.0832
| Class C:nucleus | CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE |
AT3G12810 | PredictedAffinity Capture-MS | FSW = 0.0703
| Class C:nucleus | PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT1G21690 | Predictedin vitro | FSW = 0.0919
| Class C:nucleus | EMB1968 (EMBRYO DEFECTIVE 1968) ATP BINDING / ATPASE/ DNA BINDING / DNA CLAMP LOADER/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G44530 | PredictedSynthetic LethalityCo-expression | FSW = 0.1351
| Class C:nucleus | HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT4G10670 | PredictedAffinity Capture-MS | FSW = 0.1930
| Class C:nucleus | GTC2 |
AT3G01770 | PredictedAffinity Capture-MSAffinity Capture-MSsynthetic growth defectCo-expression | FSW = 0.1214
| Class C:nucleus | ATBET10 (ARABIDOPSIS THALIANA BROMODOMAIN AND EXTRATERMINAL DOMAIN PROTEIN 10) DNA BINDING |
AT4G31720 | PredictedAffinity Capture-MS | FSW = 0.0445
| Class C:nucleus | TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION FACTOR |
AT1G55520 | PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.1221
| Class C:nucleus | TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING |
AT1G20140 | Predictedtwo hybrid | FSW = 0.0086
| Class C:nucleus | ASK4 (ARABIDOPSIS SKP1-LIKE 4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G07660 | Predictedtwo hybridAffinity Capture-MSReconstituted Complextwo hybrid | FSW = 0.1290
| Unknown | HISTONE H4 |
AT3G47690 | PredictedSynthetic Lethality | FSW = 0.0633
| Unknown | ATEB1A MICROTUBULE BINDING |
AT2G23080 | PredictedAffinity Capture-MS | FSW = 0.0778
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT2G23070 | PredictedAffinity Capture-MS | FSW = 0.0501
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT2G28820 | PredictedAffinity Capture-MS | FSW = 0.0212
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT1G52740 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1622
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT1G09200 | PredictedAffinity Capture-MSReconstituted Complex | FSW = 0.1689
| Unknown | HISTONE H3 |
AT2G18000 | PredictedAffinity Capture-MSAffinity Capture-Westerninterologs mapping | FSW = 0.1820
| Unknown | TAF14 (TBP-ASSOCIATED FACTOR 14) |
AT2G10440 | PredictedAffinity Capture-Western | FSW = 0.1455
| Unknown | UNKNOWN PROTEIN |
AT1G04950 | PredictedAffinity Capture-Western | FSW = 0.1422
| Unknown | TAF6 (TBP-ASSOCIATED FACTOR 6) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR |
AT1G66740 | PredictedAffinity Capture-WesternSynthetic Lethality | FSW = 0.1618
| Unknown | SGA2 |
AT5G63610 | Predictedbiochemical | FSW = 0.0351
| Unknown | CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G22010 | Predictedin vitroin vivo | FSW = 0.1015
| Unknown | ATRFC1 (REPLICATION FACTOR C 1) ATP BINDING / DNA BINDING / DNA CLAMP LOADER/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT2G44580 | Predictedsynthetic growth defect | FSW = 0.0698
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT1G04730 | Predictedsynthetic growth defect | FSW = 0.0811
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G54140 | PredictedSynthetic Lethality | FSW = 0.0987
| Unknown | TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT5G09740 | PredictedSynthetic Lethality | FSW = 0.1610
| Unknown | HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454