Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT3G58500 - ( PP2A-3 (PROTEIN PHOSPHATASE 2A-3) protein serine/threonine phosphatase )
35 Proteins interacs with AT3G58500Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G19980 | PredictedSynthetic LethalitySynthetic RescuePhylogenetic profile method | FSW = 0.0530
| Class C:unclear | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT4G13940 | Predictedtwo hybrid | FSW = 0.0401
| Unknown | MEE58 (MATERNAL EFFECT EMBRYO ARREST 58) ADENOSYLHOMOCYSTEINASE/ COPPER ION BINDING |
AT3G56490 | Predictedtwo hybrid | FSW = 0.1319
| Unknown | ZINC-BINDING PROTEIN PUTATIVE / PROTEIN KINASE C INHIBITOR PUTATIVE |
AT5G03650 | Predictedtwo hybrid | FSW = 0.0181
| Unknown | SBE22 (STARCH BRANCHING ENZYME 22) 14-ALPHA-GLUCAN BRANCHING ENZYME |
AT2G42500 | PredictedGene fusion methodPhylogenetic profile method | FSW = 0.2225
| Unknown | PP2A-4 HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G10430 | PredictedPhylogenetic profile method | FSW = 0.3571
| Unknown | PP2A-2 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G59830 | PredictedPhylogenetic profile method | FSW = 0.3647
| Unknown | PP2A-1 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT4G26720 | PredictedPhylogenetic profile method | FSW = 0.1471
| Unknown | PPX1 (PROTEIN PHOSPHATASE X 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G14170 | Predictedtwo hybrid | FSW = 0.0504
| Unknown | CHC1 |
AT5G35530 | Predictedtwo hybrid | FSW = 0.0327
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3C) |
AT1G64040 | PredictedPhylogenetic profile method | FSW = 0.2645
| Unknown | TOPP3 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G26980 | Predictedtwo hybrid | FSW = 0.0571
| Unknown | SYP41 (SYNTAXIN OF PLANTS 41) SNAP RECEPTOR |
AT4G34270 | Predictedtwo hybridPhenotypic Suppression | FSW = 0.1109
| Unknown | TIP41-LIKE FAMILY PROTEIN |
AT5G09310 | Predictedtwo hybrid | FSW = 0.0250
| Unknown | UNKNOWN PROTEIN |
AT5G03730 | PredictedPhenotypic SuppressionPhenotypic SuppressionPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0381
| Unknown | CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT1G69960 | PredictedPhylogenetic profile method | FSW = 0.3551
| Unknown | PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT2G46280 | Predictedtwo hybrid | FSW = 0.0061
| Unknown | TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G48790 | Predictedtwo hybrid | FSW = 0.0615
| Unknown | MOV34 FAMILY PROTEIN |
AT2G39240 | Predictedtwo hybrid | FSW = 0.0351
| Unknown | RNA POLYMERASE I TRANSCRIPTION FACTOR/ BINDING |
AT4G37280 | Predictedtwo hybrid | FSW = 0.0667
| Unknown | MRG FAMILY PROTEIN |
AT5G01160 | Predictedtwo hybrid | FSW = 0.0168
| Unknown | E-CADHERIN BINDING PROTEIN-RELATED |
AT5G07060 | Predictedtwo hybrid | FSW = 0.0269
| Unknown | ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN |
AT5G22840 | Predictedtwo hybrid | FSW = 0.0142
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G43010 | Predictedtwo hybrid | FSW = 0.0460
| Unknown | RPT4A ATPASE |
AT5G56580 | PredictedPhenotypic Suppression | FSW = 0.0237
| Unknown | MKK6 (MAP KINASE KINASE 6) MAP KINASE KINASE/ KINASE |
AT5G58020 | Predictedtwo hybrid | FSW = 0.0552
| Unknown | UNKNOWN PROTEIN |
AT5G58575 | Predictedtwo hybrid | FSW = 0.0420
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 11 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SGF11 TRANSCRIPTIONAL REGULATION (INTERPROIPR013246) HAS 148 BLAST HITS TO 148 PROTEINS IN 67 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 94 FUNGI - 32 PLANTS - 16 VIRUSES - 0 OTHER EUKARYOTES - 6 (SOURCE NCBI BLINK) |
AT5G55260 | PredictedAffinity Capture-MSPhylogenetic profile method | FSW = 0.3208
| Unknown | PPX2 (PROTEIN PHOSPHATASE X 2) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G60740 | PredictedAffinity Capture-Western | FSW = 0.0552
| Unknown | TTN1 (TITAN 1) TUBULIN BINDING |
AT4G24710 | Predictedtwo hybrid | FSW = 0.0264
| Unknown | ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT5G23570 | Predictedin vivotwo hybrid | FSW = 0.0282
| Unknown | SGS3 (SUPPRESSOR OF GENE SILENCING 3) |
AT5G59160 | Predictedin vivoin vitro | FSW = 0.1263
| Unknown | TOPP2 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G50370 | PredictedPhylogenetic profile method | FSW = 0.1029
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE |
AT3G05580 | PredictedPhylogenetic profile method | FSW = 0.2645
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE |
AT5G27840 | PredictedPhylogenetic profile method | FSW = 0.2424
| Unknown | TOPP8 PROTEIN SERINE/THREONINE PHOSPHATASE |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454