Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G24710 - ( ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding )
31 Proteins interacs with AT4G24710Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G37130 | Predictedtwo hybrid | FSW = 0.0314
| Unknown | NIA2 (NITRATE REDUCTASE 2) NITRATE REDUCTASE (NADH)/ NITRATE REDUCTASE |
AT3G62870 | PredictedSynthetic Lethality | FSW = 0.0051
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G63310 | Predictedtwo hybrid | FSW = 0.0157
| Unknown | NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2) ATP BINDING / NUCLEOSIDE DIPHOSPHATE KINASE/ PROTEIN BINDING |
AT3G07100 | Predictedtwo hybridtwo hybrid | FSW = 0.0446
| Unknown | PROTEIN TRANSPORT PROTEIN SEC24 PUTATIVE |
AT3G58500 | Predictedtwo hybrid | FSW = 0.0264
| Unknown | PP2A-3 (PROTEIN PHOSPHATASE 2A-3) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0053
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G14870 | Predictedtwo hybrid | FSW = 0.0941
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RESPONSE TO OXIDATIVE STRESS LOCATED IN PLASMA MEMBRANE EXPRESSED IN CALLUS CONTAINS INTERPRO DOMAIN/S EGF-TYPE ASPARTATE/ASPARAGINE HYDROXYLATION CONSERVED SITE (INTERPROIPR000152) PROTEIN OF UNKNOWN FUNCTION CYS-RICH (INTERPROIPR006461) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G355251) HAS 492 BLAST HITS TO 491 PROTEINS IN 78 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 93 FUNGI - 76 PLANTS - 297 VIRUSES - 0 OTHER EUKARYOTES - 26 (SOURCE NCBI BLINK) |
AT1G14880 | Predictedtwo hybrid | FSW = 0.1469
| Unknown | UNKNOWN PROTEIN |
AT5G06260 | Predictedtwo hybrid | FSW = 0.0314
| Unknown | NUCLEOLAR PROTEIN-RELATED |
AT2G41380 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0158
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT1G10060 | Predictedtwo hybrid | FSW = 0.0254
| Unknown | BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 1 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 1 (BCAT1) |
AT1G69960 | Predictedtwo hybrid | FSW = 0.0490
| Unknown | PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G03210 | Predictedtwo hybrid | FSW = 0.0735
| Unknown | PHENAZINE BIOSYNTHESIS PHZC/PHZF FAMILY PROTEIN |
AT1G14310 | Predictedtwo hybrid | FSW = 0.0147
| Unknown | HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN |
AT2G01730 | Predictedtwo hybrid | FSW = 0.0588
| Unknown | ATCPSF73-II (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73 KDA SUBUNIT-II) CATALYTIC/ PROTEIN BINDING |
AT2G41760 | Predictedtwo hybrid | FSW = 0.0294
| Unknown | UNKNOWN PROTEIN |
AT3G13700 | Predictedtwo hybrid | FSW = 0.0429
| Unknown | RNA-BINDING PROTEIN PUTATIVE |
AT3G21215 | Predictedtwo hybrid | FSW = 0.0935
| Unknown | RNA-BINDING PROTEIN PUTATIVE |
AT4G02860 | Predictedtwo hybrid | FSW = 0.1111
| Unknown | CATALYTIC |
AT4G16144 | Predictedtwo hybrid | FSW = 0.0428
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S MOV34/MPN/PAD-1 (INTERPROIPR000555) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS MOV34 FAMILY PROTEIN (TAIRAT1G487901) HAS 622 BLAST HITS TO 459 PROTEINS IN 132 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 326 FUNGI - 156 PLANTS - 82 VIRUSES - 0 OTHER EUKARYOTES - 58 (SOURCE NCBI BLINK) |
AT3G23800 | Predictedtwo hybrid | FSW = 0.1469
| Unknown | SBP3 (SELENIUM-BINDING PROTEIN 3) SELENIUM BINDING |
AT4G14040 | Predictedtwo hybrid | FSW = 0.0935
| Unknown | SBP2 (SELENIUM-BINDING PROTEIN 2) SELENIUM BINDING |
AT5G18200 | Predictedtwo hybrid | FSW = 0.0611
| Unknown | UTPGALACTOSE-1-PHOSPHATE URIDYLYLTRANSFERASE/ RIBOSE-5-PHOSPHATE ADENYLYLTRANSFERASE |
AT5G35525 | Predictedtwo hybrid | FSW = 0.0527
| Unknown | UNKNOWN PROTEIN |
AT5G44730 | Predictedtwo hybrid | FSW = 0.0245
| Unknown | HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN |
AT1G29990 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0030
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT2G21250 | PredictedAffinity Capture-MS | FSW = 0.0162
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
AT4G29170 | PredictedPhenotypic Suppression | FSW = 0.0277
| Unknown | ATMND1 |
AT5G38290 | Predictedtwo hybrid | FSW = 0.0658
| Unknown | PEPTIDYL-TRNA HYDROLASE FAMILY PROTEIN |
AT3G25670 | PredictedGene fusion method | FSW = 0.0611
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
AT4G11920 | PredictedGene fusion method | FSW = 0.0296
| Unknown | CCS52A2 SIGNAL TRANSDUCER |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454