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AT3G13090 - ( ATMRP8 ATPase coupled to transmembrane movement of substances )

15 Proteins interacs with AT3G13090

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT2G47800	Predicted Enriched domain pair Phylogenetic profile method Co-expression	FSW = 0.8966	Class C: vacuole	ATMRP4 (ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 4) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / FOLIC ACID TRANSPORTER
AT3G21250	Predicted Enriched domain pair Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.9011	Class C: vacuole	ATMRP6 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT3G13080	Predicted Enriched domain pair Gene neighbors method Phylogenetic profile method	FSW = 0.3586	Class C: vacuole	ATMRP3 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / CHLOROPHYLL CATABOLITE TRANSPORTER/ GLUTATHIONE S-CONJUGATE-EXPORTING ATPASE
AT3G59140	Predicted Enriched domain pair Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.9011	Class C: vacuole	ATMRP14 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT3G13100	Predicted Enriched domain pair Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.9333	Class C: vacuole	ATMRP7 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT1G04120	Predicted Enriched domain pair Phylogenetic profile method Co-expression	FSW = 0.8966	Class C: vacuole	ATMRP5 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / SULFONYLUREA RECEPTOR
AT3G62700	Predicted Enriched domain pair Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.8966	Class C: vacuole	ATMRP10 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT2G07680	Predicted Enriched domain pair Phylogenetic profile method Co-expression	FSW = 0.7912	Class C: vacuole	ATMRP11 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT1G30400	Predicted Enriched domain pair Phylogenetic profile method Co-expression	FSW = 0.7094	Class C: vacuole	MRP1 (ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / XENOBIOTIC-TRANSPORTING ATPASE
AT3G62870	Predicted synthetic growth defect	FSW = 0.0012	Class C: vacuole	60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT3G22590	Predicted Affinity Capture-MS	FSW = 0.0058	Unknown	RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN
AT3G60160	Predicted Enriched domain pair Gene neighbors method Phylogenetic profile method	FSW = 0.9011	Unknown	ATMRP9 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT1G30410	Predicted Enriched domain pair Phylogenetic profile method	FSW = 0.8966	Unknown	ATMRP13 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT3G60970	Predicted Enriched domain pair Phylogenetic profile method	FSW = 0.5455	Unknown	ATMRP15 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT1G30420	Predicted Enriched domain pair Phylogenetic profile method	FSW = 0.8966	Unknown	ATMRP12 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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AT3G13090 - ( ATMRP8 ATPase coupled to transmembrane movement of substances )

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Unknown

Unknown

Unknown

Unknown

Unknown

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Fasta sequences:

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FSW

C3

PEP

How to cite