Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G13460 - ( ECT2 protein binding )
16 Proteins interacs with AT3G13460Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G17510 | Experimentaltwo hybrid | FSW = 0.0602
| Unknown | CIPK1 (CBL-INTERACTING PROTEIN KINASE 1) KINASE/ PROTEIN BINDING |
AT4G28860 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic EnhancementSynthetic Lethality | FSW = 0.2613
| Class C:nucleuscytosol | CKL4 (CASEIN KINASE I-LIKE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G14420 | PredictedAffinity Capture-Western | FSW = 0.2898
| Class C:nucleus | (S)-2-HYDROXY-ACID OXIDASE PEROXISOMAL PUTATIVE / GLYCOLATE OXIDASE PUTATIVE / SHORT CHAIN ALPHA-HYDROXY ACID OXIDASE PUTATIVE |
AT3G03920 | PredictedAffinity Capture-WesternSynthetic Lethality | FSW = 0.0978
| Class C:nucleus | GAR1 RNA-BINDING REGION FAMILY PROTEIN |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0137
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT3G22890 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.0648
| Unknown | APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP) |
AT5G06290 | PredictedSynthetic Lethality | FSW = 0.0189
| Unknown | 2-CYS PRX B (2-CYSTEINE PEROXIREDOXIN B) ANTIOXIDANT/ PEROXIREDOXIN |
AT4G21680 | PredictedPhenotypic Enhancement | FSW = 0.0478
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT1G64880 | PredictedReconstituted Complex | FSW = 0.1204
| Unknown | RIBOSOMAL PROTEIN S5 FAMILY PROTEIN |
AT5G10330 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternReconstituted Complex | FSW = 0.0745
| Unknown | HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1) HISTIDINOL-PHOSPHATE TRANSAMINASE |
AT1G62800 | PredictedPhenotypic Enhancement | FSW = 0.0793
| Unknown | ASP4 (ASPARTATE AMINOTRANSFERASE 4) CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE/ TRANSFERASE TRANSFERRING NITROGENOUS GROUPS |
AT3G44320 | Predictedsynthetic growth defectAffinity Capture-Western | FSW = 0.2020
| Unknown | NIT3 (NITRILASE 3) INDOLE-3-ACETONITRILE NITRILASE/ INDOLE-3-ACETONITRILE NITRILE HYDRATASE/ NITRILASE |
AT2G23820 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1082
| Unknown | METAL-DEPENDENT PHOSPHOHYDROLASE HD DOMAIN-CONTAINING PROTEIN |
AT2G47090 | PredictedSynthetic Rescue | FSW = 0.0328
| Unknown | NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT2G47970 | Predictedinterologs mapping | FSW = 0.1701
| Unknown | NPL4 FAMILY PROTEIN |
AT3G25900 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.1021
| Unknown | HMT-1 HOMOCYSTEINE S-METHYLTRANSFERASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454