Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT3G13460 - ( ECT2 protein binding )

16 Proteins interacs with AT3G13460
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G17510

Experimental

two hybrid

FSW = 0.0602

Unknown

CIPK1 (CBL-INTERACTING PROTEIN KINASE 1) KINASE/ PROTEIN BINDING
AT4G28860

Predicted

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

Synthetic Lethality

FSW = 0.2613

Class C:

nucleus

cytosol

CKL4 (CASEIN KINASE I-LIKE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G14420

Predicted

Affinity Capture-Western

FSW = 0.2898

Class C:

nucleus

(S)-2-HYDROXY-ACID OXIDASE PEROXISOMAL PUTATIVE / GLYCOLATE OXIDASE PUTATIVE / SHORT CHAIN ALPHA-HYDROXY ACID OXIDASE PUTATIVE
AT3G03920

Predicted

Affinity Capture-Western

Synthetic Lethality

FSW = 0.0978

Class C:

nucleus

GAR1 RNA-BINDING REGION FAMILY PROTEIN
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0137

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT3G22890

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.0648

Unknown

APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP)
AT5G06290

Predicted

Synthetic Lethality

FSW = 0.0189

Unknown

2-CYS PRX B (2-CYSTEINE PEROXIREDOXIN B) ANTIOXIDANT/ PEROXIREDOXIN
AT4G21680

Predicted

Phenotypic Enhancement

FSW = 0.0478

Unknown

PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT1G64880

Predicted

Reconstituted Complex

FSW = 0.1204

Unknown

RIBOSOMAL PROTEIN S5 FAMILY PROTEIN
AT5G10330Predicted

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Reconstituted Complex

FSW = 0.0745

Unknown

HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1) HISTIDINOL-PHOSPHATE TRANSAMINASE
AT1G62800

Predicted

Phenotypic Enhancement

FSW = 0.0793

Unknown

ASP4 (ASPARTATE AMINOTRANSFERASE 4) CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE/ TRANSFERASE TRANSFERRING NITROGENOUS GROUPS
AT3G44320

Predicted

synthetic growth defect

Affinity Capture-Western

FSW = 0.2020

Unknown

NIT3 (NITRILASE 3) INDOLE-3-ACETONITRILE NITRILASE/ INDOLE-3-ACETONITRILE NITRILE HYDRATASE/ NITRILASE
AT2G23820

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1082

Unknown

METAL-DEPENDENT PHOSPHOHYDROLASE HD DOMAIN-CONTAINING PROTEIN
AT2G47090

Predicted

Synthetic Rescue

FSW = 0.0328

Unknown

NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING
AT2G47970

Predicted

interologs mapping

FSW = 0.1701

Unknown

NPL4 FAMILY PROTEIN
AT3G25900

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.1021

Unknown

HMT-1 HOMOCYSTEINE S-METHYLTRANSFERASE

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454