Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G26240 - ( CLC-D (CHLORIDE CHANNEL D) anion channel/ voltage-gated chloride channel )
16 Proteins interacs with AT5G26240Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G59820 | PredictedPhenotypic Enhancement | FSW = 0.0978
| Class C:golgi | ALA3 (AMINOPHOSPHOLIPID ATPASE3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / PHOSPHOLIPID TRANSPORTER |
AT5G18280 | PredictedPhenotypic Enhancement | FSW = 0.2094
| Class C:golgi | ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2) ATPASE/ NUCLEOTIDE DIPHOSPHATASE |
AT1G71270 | PredictedPhenotypic Enhancement | FSW = 0.1219
| Class C:golgi | POK (POKY POLLEN TUBE) |
AT2G01720 | PredictedPhenotypic Enhancement | FSW = 0.0600
| Unknown | RIBOPHORIN I FAMILY PROTEIN |
AT5G66680 | PredictedPhenotypic Enhancement | FSW = 0.0446
| Unknown | DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE |
AT2G44610 | Predictedinteraction prediction | FSW = 0.0591
| Unknown | RAB6A GTP BINDING / PROTEIN BINDING |
AT1G79590 | Predictedtwo hybridinteraction prediction | FSW = 0.0928
| Unknown | SYP52 (SYNTAXIN OF PLANTS 52) SNAP RECEPTOR |
AT1G07670 | PredictedPhenotypic Enhancement | FSW = 0.0793
| Unknown | CALCIUM-TRANSPORTING ATPASE |
AT5G52640 | PredictedAffinity Capture-MSsynthetic growth defect | FSW = 0.0172
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT5G33280 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1053
| Unknown | CHLORIDE CHANNEL-LIKE (CLC) PROTEIN PUTATIVE |
AT1G79000 | Predictedtwo hybridtwo hybrid | FSW = 0.0222
| Unknown | HAC1 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ TRANSCRIPTION COFACTOR |
AT1G01910 | PredictedAffinity Capture-Westerntwo hybrid | FSW = 0.1079
| Unknown | ANION-TRANSPORTING ATPASE PUTATIVE |
AT1G80500 | PredictedPhenotypic Enhancement | FSW = 0.0484
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN TRANSPORT ER TO GOLGI VESICLE-MEDIATED TRANSPORT LOCATED IN INTRACELLULAR EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SEDLIN (INTERPROIPR006722) LONGIN-LIKE (INTERPROIPR011012) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G209301) HAS 437 BLAST HITS TO 435 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 248 FUNGI - 75 PLANTS - 53 VIRUSES - 0 OTHER EUKARYOTES - 61 (SOURCE NCBI BLINK) |
AT4G17910 | PredictedPhenotypic Enhancement | FSW = 0.1385
| Unknown | TRANSFERASE TRANSFERRING ACYL GROUPS |
AT5G10260 | PredictedSynthetic Lethality | FSW = 0.0383
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G40170 | PredictedGene fusion method | FSW = 0.1053
| Unknown | ATRLP54 (RECEPTOR LIKE PROTEIN 54) KINASE/ PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454