Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G58800 - ( quinone reductase family protein )
32 Proteins interacs with AT5G58800Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G79550 | PredictedPhenotypic Enhancement | FSW = 0.3086
| Class C:plasma membrane | PGK (PHOSPHOGLYCERATE KINASE) PHOSPHOGLYCERATE KINASE |
AT1G30360 | PredictedAffinity Capture-MS | FSW = 0.1250
| Class C:plasma membrane | ERD4 (EARLY-RESPONSIVE TO DEHYDRATION 4) |
AT5G54500 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0539
| Class C:plasma membrane | FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1) FMN BINDING / OXIDOREDUCTASE ACTING ON NADH OR NADPH QUINONE OR SIMILAR COMPOUND AS ACCEPTOR |
AT2G37270 | PredictedReconstituted Complex | FSW = 0.0428
| Class C:plasma membrane | ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G36620 | PredictedAffinity Capture-MS | FSW = 0.0208
| Class C:plasma membrane | RPL24A (RIBOSOMAL PROTEIN L24) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G45960 | PredictedAffinity Capture-MS | FSW = 0.0083
| Class C:plasma membrane | PIP1B (NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B) WATER CHANNEL |
AT3G05560 | PredictedPhenotypic Enhancement | FSW = 0.2075
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L22-2 (RPL22B) |
AT5G08570 | PredictedAffinity Capture-MS | FSW = 0.0432
| Class C:plasma membrane | PYRUVATE KINASE PUTATIVE |
AT4G27270 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0552
| Class C:plasma membrane | QUINONE REDUCTASE FAMILY PROTEIN |
AT4G19690 | Predictedco-fractionationCo-fractionation | FSW = 0.1403
| Class C:plasma membrane | IRT1 (IRON-REGULATED TRANSPORTER 1) CADMIUM ION TRANSMEMBRANE TRANSPORTER/ COPPER UPTAKE TRANSMEMBRANE TRANSPORTER/ IRON ION TRANSMEMBRANE TRANSPORTER/ MANGANESE ION TRANSMEMBRANE TRANSPORTER/ ZINC ION TRANSMEMBRANE TRANSPORTER |
AT5G09590 | PredictedReconstituted Complex | FSW = 0.0464
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT2G19860 | PredictedPhenotypic Enhancement | FSW = 0.0848
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT1G11320 | Predictedtwo hybrid | FSW = 0.0879
| Unknown | UNKNOWN PROTEIN |
AT3G20550 | Predictedco-fractionationCo-fractionation | FSW = 0.1069
| Unknown | DDL (DAWDLE) |
AT2G44900 | PredictedReconstituted Complex | FSW = 0.0910
| Unknown | ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN / F-BOX FAMILY PROTEIN |
AT4G15900 | Predictedtwo hybrid | FSW = 0.0042
| Unknown | PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G63960 | PredictedReconstituted Complex | FSW = 0.0583
| Unknown | EMB2780 (EMBRYO DEFECTIVE 2780) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT1G59580 | PredictedReconstituted Complex | FSW = 0.1111
| Unknown | ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) MAP KINASE/ KINASE/ PROTEIN KINASE |
AT2G27170 | PredictedAffinity Capture-Westerntwo hybridtwo hybrid | FSW = 0.0192
| Unknown | TTN7 (TITAN7) ATP BINDING / PROTEIN BINDING |
AT2G30650 | PredictedReconstituted Complex | FSW = 0.1256
| Unknown | CATALYTIC |
AT2G46280 | PredictedReconstituted Complextwo hybrid | FSW = 0.1015
| Unknown | TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT3G13330 | PredictedReconstituted Complex | FSW = 0.0537
| Unknown | BINDING |
AT1G29800 | PredictedPhenotypic Enhancement | FSW = 0.2857
| Unknown | PHOSPHOINOSITIDE BINDING / ZINC ION BINDING |
AT1G55810 | Predictedtwo hybrid | FSW = 0.0499
| Unknown | URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE |
AT1G70290 | PredictedAffinity Capture-MS | FSW = 0.0251
| Unknown | ATTPS8 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT1G71530 | Predictedtwo hybrid | FSW = 0.0208
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT2G04660 | PredictedAffinity Capture-MS | FSW = 0.0217
| Unknown | APC2 UBIQUITIN PROTEIN LIGASE BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G54510 | PredictedAffinity Capture-MS | FSW = 0.0714
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT4G04695 | PredictedAffinity Capture-MS | FSW = 0.0093
| Unknown | CPK31 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT5G42190 | PredictedPhenotypic Enhancement | FSW = 0.0487
| Unknown | ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G46410 | PredictedReconstituted Complex | FSW = 0.1253
| Unknown | NLI INTERACTING FACTOR (NIF) FAMILY PROTEIN |
AT5G61330 | PredictedPhenotypic Enhancement | FSW = 0.1456
| Unknown | RRNA PROCESSING PROTEIN-RELATED |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454