Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G79550 - ( PGK (PHOSPHOGLYCERATE KINASE) phosphoglycerate kinase )
15 Proteins interacs with AT1G79550Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G12780 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0914
| Class C:plastidnucleus | PGK1 (PHOSPHOGLYCERATE KINASE 1) PHOSPHOGLYCERATE KINASE |
AT3G20550 | Predictedco-fractionationCo-fractionation | FSW = 0.1507
| Class C:plastidnucleus | DDL (DAWDLE) |
AT1G74260 | Predictedtwo hybridGene neighbors methodCo-expression | FSW = 0.1882
| Class C:plastid | PUR4 (PURINE BIOSYNTHESIS 4) ATP BINDING / CATALYTIC/ PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE |
AT1G56190 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0914
| Class C:plastid | PHOSPHOGLYCERATE KINASE PUTATIVE |
AT3G48870 | PredictedSynthetic RescuePhenotypic SuppressionSynthetic Rescue | FSW = 0.1143
| Class C:plastid | HSP93-III ATP BINDING / ATPASE/ DNA BINDING / NUCLEASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G02500 | Predictedinterologs mapping | FSW = 0.1035
| Class C:plasma membranenucleus | SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1) METHIONINE ADENOSYLTRANSFERASE |
AT3G05560 | PredictedPhenotypic Enhancement | FSW = 0.2959
| Class C:plasma membranenucleus | 60S RIBOSOMAL PROTEIN L22-2 (RPL22B) |
AT5G58800 | PredictedPhenotypic Enhancement | FSW = 0.3086
| Class C:plasma membrane | QUINONE REDUCTASE FAMILY PROTEIN |
AT4G19690 | Predictedco-fractionationCo-fractionation | FSW = 0.2356
| Class C:plasma membrane | IRT1 (IRON-REGULATED TRANSPORTER 1) CADMIUM ION TRANSMEMBRANE TRANSPORTER/ COPPER UPTAKE TRANSMEMBRANE TRANSPORTER/ IRON ION TRANSMEMBRANE TRANSPORTER/ MANGANESE ION TRANSMEMBRANE TRANSPORTER/ ZINC ION TRANSMEMBRANE TRANSPORTER |
AT2G19860 | PredictedPhenotypic Enhancement | FSW = 0.0876
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT3G07560 | PredictedSynthetic RescuePhenotypic SuppressionSynthetic Rescue | FSW = 0.1391
| Unknown | PEX13 (PEROXIN 13) PROTEIN BINDING |
AT1G29800 | PredictedPhenotypic Enhancement | FSW = 0.6857
| Unknown | PHOSPHOINOSITIDE BINDING / ZINC ION BINDING |
AT5G42190 | PredictedPhenotypic Enhancement | FSW = 0.0682
| Unknown | ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G61330 | PredictedPhenotypic Enhancement | FSW = 0.2849
| Unknown | RRNA PROCESSING PROTEIN-RELATED |
AT3G43790 | Predictedtwo hybrid | FSW = 0.0410
| Unknown | ZIFL2 (ZINC INDUCED FACILITATOR-LIKE 2) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454