Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G07560 - ( PEX13 (PEROXIN 13) protein binding )
18 Proteins interacs with AT3G07560Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G68010 | Experimentalconfocal microscopy | FSW = 0.0863
| Class A:peroxisomeClass B:plasma membranecytosolClass D:plastid (p = 0.78) | HPR GLYCERATE DEHYDROGENASE/ POLY(U) BINDING |
AT5G62810 | Experimentalinteraction detection method | FSW = 0.2297
| Class A:peroxisomeClass B:plasma membranecytosol | PEX14 PROTEIN BINDING / PROTEIN TRANSPORTER |
AT3G03490 | Experimentalinteraction detection method | FSW = 0.0455
| Class A:peroxisomeClass B:cytosolClass D:nucleus (p = 0.78) | PEX19-1 (PEROXIN 19-1) |
AT1G29260 | Experimentaltwo hybrid | FSW = 0.1344
| Class A:peroxisomeClass B:cytosolClass D:extracellular (p = 0.86) | PEX7 PEROXISOME MATRIX TARGETING SIGNAL-2 BINDING / PROTEIN BINDING |
AT2G32950 | Experimental | FSW = 0.0152
| Class A:cytosolClass B:peroxisomenucleusClass D:nucleus (p = 0.78) | COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G56290 | Predictedtwo hybridin vitroin vitrotwo hybrid | FSW = 0.0929
| Class C:peroxisome | PEX5 (PEROXIN 5) PEROXISOME MATRIX TARGETING SIGNAL-1 BINDING / PROTEIN BINDING |
AT5G17550 | Predictedtwo hybridtwo hybridin vivoin vitro | FSW = 0.0898
| Class C:peroxisome | PEX19-2 |
AT1G79550 | PredictedSynthetic RescuePhenotypic SuppressionSynthetic Rescue | FSW = 0.1391
| Unknown | PGK (PHOSPHOGLYCERATE KINASE) PHOSPHOGLYCERATE KINASE |
AT3G23810 | PredictedSynthetic Rescue | FSW = 0.0896
| Unknown | SAHH2 (S-ADENOSYL-L-HOMOCYSTEINE (SAH) HYDROLASE 2) ADENOSYLHOMOCYSTEINASE/ BINDING / CATALYTIC |
AT3G48870 | PredictedPhenotypic EnhancementSynthetic LethalitySynthetic Lethalitysynthetic growth defectPhenotypic Enhancementsynthetic growth defectPhenotypic EnhancementPhenotypic EnhancementSynthetic Lethalitysynthetic growth defectPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancementsynthetic growth defectSynthetic LethalitySynthetic Rescueinterologs mappingPhenotypic Suppression | FSW = 0.4057
| Unknown | HSP93-III ATP BINDING / ATPASE/ DNA BINDING / NUCLEASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G46110 | Predictedtwo hybrid | FSW = 0.0655
| Unknown | APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2) ANTIPORTER/ TRIOSE-PHOSPHATE TRANSMEMBRANE TRANSPORTER |
AT2G38960 | Predictedinterologs mappingSynthetic RescuePhenotypic Enhancement | FSW = 0.0473
| Unknown | AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING |
AT1G29800 | PredictedSynthetic RescuePhenotypic SuppressionSynthetic Rescue | FSW = 0.1265
| Unknown | PHOSPHOINOSITIDE BINDING / ZINC ION BINDING |
AT1G55300 | PredictedPhenotypic Enhancement | FSW = 0.0119
| Unknown | TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT1G69750 | Predictedinterologs mappingSynthetic RescuePhenotypic Enhancement | FSW = 0.1988
| Unknown | COX19 FAMILY PROTEIN |
AT1G08630 | Predictedtwo hybrid | FSW = 0.0363
| Unknown | THA1 (THREONINE ALDOLASE 1) ALDEHYDE-LYASE/ THREONINE ALDOLASE |
AT4G24740 | Predictedsynthetic growth defect | FSW = 0.0843
| Unknown | AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2) KINASE/ PROTEIN KINASE |
AT5G63650 | PredictedSynthetic Rescue | FSW = 0.1325
| Unknown | SNRK25 (SNF1-RELATED PROTEIN KINASE 25) KINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454