Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G01320 - ( pyruvate decarboxylase putative )
23 Proteins interacs with AT5G01320Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G28715 | Predictedinteraction prediction | FSW = 0.0286
| Unknown | H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0064
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT1G74710 | Predictedsynthetic growth defect | FSW = 0.0338
| Unknown | ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0048
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT4G34430 | PredictedAffinity Capture-MS | FSW = 0.0227
| Unknown | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT3G57150 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0375
| Unknown | NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE |
AT4G18880 | PredictedSynthetic Lethality | FSW = 0.0766
| Unknown | AT-HSFA4A DNA BINDING / TRANSCRIPTION FACTOR |
AT3G09590 | PredictedSynthetic Rescue | FSW = 0.1481
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT2G43460 | PredictedSynthetic Lethality | FSW = 0.0166
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38A) |
AT3G11530 | PredictedSynthetic Rescue | FSW = 0.1111
| Unknown | VACUOLAR PROTEIN SORTING 55 FAMILY PROTEIN / VPS55 FAMILY PROTEIN |
AT1G15440 | PredictedAffinity Capture-MS | FSW = 0.0220
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G25155 | Predictedsynthetic growth defect | FSW = 0.0228
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT1G54290 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0152
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT2G34180 | Predictedsynthetic growth defect | FSW = 0.0313
| Unknown | CIPK13 (CBL-INTERACTING PROTEIN KINASE 13) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G39840 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0063
| Unknown | TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT4G15475 | PredictedAffinity Capture-MS | FSW = 0.0171
| Unknown | F-BOX FAMILY PROTEIN (FBL4) |
AT4G16970 | PredictedAffinity Capture-MS | FSW = 0.0108
| Unknown | ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G01720 | Predictedinteraction prediction | FSW = 0.0618
| Unknown | F-BOX FAMILY PROTEIN (FBL3) |
AT1G69670 | Predictedinteraction prediction | FSW = 0.0702
| Unknown | CUL3B (CULLIN 3B) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G01330 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile method | FSW = 0.1633
| Unknown | PDC3 (PYRUVATE DECARBOXYLASE-3) CARBOXY-LYASE/ CATALYTIC/ MAGNESIUM ION BINDING / PYRUVATE DECARBOXYLASE/ THIAMIN PYROPHOSPHATE BINDING / TRANSFERASE |
AT4G33070 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.1212
| Unknown | PYRUVATE DECARBOXYLASE PUTATIVE |
AT5G54960 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.1232
| Unknown | PDC2 (PYRUVATE DECARBOXYLASE-2) CARBOXY-LYASE/ CATALYTIC/ MAGNESIUM ION BINDING / PYRUVATE DECARBOXYLASE/ THIAMIN PYROPHOSPHATE BINDING |
AT2G02980 | PredictedGene fusion method | FSW = 0.0385
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454