Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G18240 - ( RER1 protein putative )
24 Proteins interacs with AT2G18240Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G60640 | Predictedinterologs mapping | FSW = 0.0552
| Unknown | ATPDIL1-4 (PDI-LIKE 1-4) PROTEIN DISULFIDE ISOMERASE |
AT5G66680 | Predictedinterologs mapping | FSW = 0.1617
| Unknown | DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE |
AT2G01470 | Predictedtwo hybrid | FSW = 0.0857
| Unknown | STL2P (SEC12P-LIKE 2 PROTEIN) NUCLEOTIDE BINDING |
AT1G31780 | Predictedinterologs mapping | FSW = 0.1458
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
AT2G45200 | Predictedinterologs mapping | FSW = 0.1955
| Unknown | GOS12 (GOLGI SNARE 12) SNARE BINDING |
AT2G30710 | Predictedinterologs mapping | FSW = 0.2196
| Unknown | RABGAP/TBC DOMAIN-CONTAINING PROTEIN |
AT1G09210 | Predictedinterologs mapping | FSW = 0.2873
| Unknown | CALRETICULIN 2 (CRT2) |
AT5G23630 | Predictedinterologs mapping | FSW = 0.1974
| Unknown | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
AT2G17520 | Predictedinterologs mapping | FSW = 0.1154
| Unknown | IRE1A ENDORIBONUCLEASE/ KINASE |
AT2G22290 | PredictedSynthetic Lethality | FSW = 0.0756
| Unknown | ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING |
AT2G21600 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2759
| Unknown | ATRER1B |
AT1G30000 | Predictedtwo hybrid | FSW = 0.0756
| Unknown | GLYCOSIDE HYDROLASE FAMILY 47 PROTEIN |
AT1G71270 | Predictedinterologs mapping | FSW = 0.1381
| Unknown | POK (POKY POLLEN TUBE) |
AT1G10130 | Predictedinterologs mapping | FSW = 0.1526
| Unknown | ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE |
AT2G39630 | Predictedtwo hybrid | FSW = 0.2744
| Unknown | GLYCOSYL TRANSFERASE FAMILY 2 PROTEIN |
AT3G05710 | Predictedinterologs mapping | FSW = 0.1511
| Unknown | SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR |
AT1G76400 | Predictedinterologs mapping | FSW = 0.1038
| Unknown | RIBOPHORIN I FAMILY PROTEIN |
AT2G23310 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2759
| Unknown | ATRER1C1 |
AT4G39220 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.6698
| Unknown | ATRER1A |
AT4G39830 | PredictedAffinity Capture-Western | FSW = 0.0855
| Unknown | L-ASCORBATE OXIDASE PUTATIVE |
AT4G10790 | Predictedinterologs mapping | FSW = 0.0775
| Unknown | UBX DOMAIN-CONTAINING PROTEIN |
AT2G34770 | Predictedinterologs mapping | FSW = 0.1003
| Unknown | FAH1 (FATTY ACID HYDROXYLASE 1) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE |
AT1G57600 | Predictedinterologs mapping | FSW = 0.3202
| Unknown | MEMBRANE BOUND O-ACYL TRANSFERASE (MBOAT) FAMILY PROTEIN |
AT1G09460 | Predictedinterologs mapping | FSW = 0.3125
| Unknown | GLUCAN ENDO-13-BETA-GLUCOSIDASE-RELATED |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454