Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G39050 - ( kinesin-related protein (MKRP2) )

18 Proteins interacs with AT4G39050
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G60840

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.4057

Unknown

MAP65-4 (MICROTUBULE-ASSOCIATED PROTEIN 65-4)
AT3G54670

Predicted

Affinity Capture-MS

FSW = 0.0162

Unknown

TTN8 (TITAN8) ATP BINDING / TRANSPORTER
AT1G12520

Predicted

Phenotypic Enhancement

FSW = 0.0344

Unknown

ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE
AT1G71440

Predicted

Synthetic Lethality

FSW = 0.2154

Unknown

PFI (PFIFFERLING)
AT3G48750

Predicted

biochemical

FSW = 0.0252

Unknown

CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT3G61650

Predicted

Synthetic Lethality

FSW = 0.3135

Unknown

TUBG1 (GAMMA-TUBULIN) GTP BINDING / GTPASE/ STRUCTURAL MOLECULE
AT1G59820

Predicted

Synthetic Lethality

FSW = 0.0449

Unknown

ALA3 (AMINOPHOSPHOLIPID ATPASE3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / PHOSPHOLIPID TRANSPORTER
AT2G30260

Predicted

interologs mapping

FSW = 0.0256

Unknown

U2B (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT5G67270

Predicted

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1498

Unknown

ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING
AT1G08780

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1120

Unknown

AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING
AT1G18610

Predicted

Affinity Capture-MS

FSW = 0.1091

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GALACTOSE OXIDASE/KELCH BETA-PROPELLER (INTERPROIPR011043) KELCH REPEAT TYPE 1 (INTERPROIPR006652) KELCH REPEAT TYPE 2 (INTERPROIPR011498) KELCH-TYPE BETA PROPELLER (INTERPROIPR015915) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G741501) HAS 8761 BLAST HITS TO 4412 PROTEINS IN 271 SPECIES ARCHAE - 12 BACTERIA - 304 METAZOA - 4209 FUNGI - 851 PLANTS - 1246 VIRUSES - 11 OTHER EUKARYOTES - 2128 (SOURCE NCBI BLINK)
AT1G29990

Predicted

Synthetic Lethality

FSW = 0.0966

Unknown

PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING
AT3G22480

Predicted

Synthetic Lethality

FSW = 0.1028

Unknown

PREFOLDIN-RELATED KE2 FAMILY PROTEIN
AT1G04160

Predicted

Synthetic Lethality

FSW = 0.0110

Unknown

XIB (MYOSIN XI B) MOTOR
AT3G49650

Predicted

Synthetic Rescue

FSW = 0.1986

Unknown

KINESIN MOTOR PROTEIN-RELATED
AT4G27180

Predicted

Synthetic Rescue

FSW = 0.3126

Unknown

ATK2 (ARABIDOPSIS THALIANA KINESIN 2) MICROTUBULE BINDING / MICROTUBULE MOTOR
AT5G23290

Predicted

Synthetic Lethality

FSW = 0.1273

Unknown

PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING
AT5G49510

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1427

Unknown

PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454