Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G10930 - ( CIPK5 (CBL-INTERACTING PROTEIN KINASE 5) ATP binding / kinase/ protein kinase/ protein serine/threonine kinase )
19 Proteins interacs with AT5G10930Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G26570 | Experimentaltwo hybrid | FSW = 0.0860
| Unknown | ATCBL3 (ARABIDOPSIS THALIANA CALCINEURIN B-LIKE 3) CALCIUM ION BINDING |
AT4G17615 | Experimentaltwo hybrid | FSW = 0.1629
| Unknown | CBL1 (CALCINEURIN B-LIKE PROTEIN 1) CALCIUM ION BINDING |
AT5G47100 | Experimental | FSW = 0.0556
| Unknown | CBL9 CALCIUM ION BINDING |
AT5G24270 | Experimentaltwo hybrid | FSW = 0.0889
| Unknown | SOS3 (SALT OVERLY SENSITIVE 3) CALCIUM ION BINDING / CALCIUM-DEPENDENT PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G62870 | PredictedAffinity Capture-MSsynthetic growth defect | FSW = 0.0097
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT3G14420 | PredictedAffinity Capture-Westerntwo hybridCo-purification | FSW = 0.2598
| Unknown | (S)-2-HYDROXY-ACID OXIDASE PEROXISOMAL PUTATIVE / GLYCOLATE OXIDASE PUTATIVE / SHORT CHAIN ALPHA-HYDROXY ACID OXIDASE PUTATIVE |
AT1G74710 | Predictedsynthetic growth defect | FSW = 0.1062
| Unknown | ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE |
AT4G30310 | Predictedtwo hybrid | FSW = 0.2517
| Unknown | RIBITOL KINASE PUTATIVE |
AT2G31910 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Western | FSW = 0.5806
| Unknown | ATCHX21 (CATION/H+ EXCHANGER 21) SODIUMHYDROGEN ANTIPORTER |
AT2G33370 | PredictedAffinity Capture-Westerntwo hybrid | FSW = 0.2339
| Unknown | 60S RIBOSOMAL PROTEIN L23 (RPL23B) |
AT3G52400 | Predictedco-fractionationCo-fractionation | FSW = 0.4812
| Unknown | SYP122 (SYNTAXIN OF PLANTS 122) SNAP RECEPTOR |
AT4G24400 | PredictedGene fusion methodCo-expression | FSW = 0.0542
| Unknown | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT5G48070 | Predictedtwo hybrid | FSW = 0.0383
| Unknown | XTH20 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 20) HYDROLASE ACTING ON GLYCOSYL BONDS / HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS / XYLOGLUCANXYLOGLUCOSYL TRANSFERASE |
AT2G17800 | Predictedtwo hybrid | FSW = 0.0803
| Unknown | ARAC1 GTP BINDING |
AT5G62160 | Predictedco-fractionationCo-fractionation | FSW = 0.4354
| Unknown | ATZIP12 (ZINC TRANSPORTER 12 PRECURSOR) CATION TRANSMEMBRANE TRANSPORTER/ METAL ION TRANSMEMBRANE TRANSPORTER |
AT4G30800 | PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.1190
| Unknown | 40S RIBOSOMAL PROTEIN S11 (RPS11B) |
AT1G25155 | Predictedsynthetic growth defect | FSW = 0.0855
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT5G60870 | PredictedGene fusion method | FSW = 0.0567
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT1G49600 | PredictedGene fusion method | FSW = 0.1559
| Unknown | ATRBP47A (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47A) RNA BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454