Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G63230 - ( pentatricopeptide (PPR) repeat-containing protein )
18 Proteins interacs with AT1G63230Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G06530 | PredictedGene fusion method | FSW = 0.8125
| Unknown | MYOSIN HEAVY CHAIN-RELATED |
AT1G76040 | PredictedGene fusion method | FSW = 0.0679
| Unknown | CPK29 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT2G47470 | PredictedGene fusion method | FSW = 0.3728
| Unknown | UNE5 (UNFERTILIZED EMBRYO SAC 5) PROTEIN DISULFIDE ISOMERASE |
AT4G18370 | PredictedGene fusion method | FSW = 0.2338
| Unknown | DEG5 (DEGP PROTEASE 5) CATALYTIC/ SERINE-TYPE ENDOPEPTIDASE/ SERINE-TYPE PEPTIDASE |
AT5G28020 | PredictedGene fusion method | FSW = 0.1988
| Unknown | CYSD2 (CYSTEINE SYNTHASE D2) CATALYTIC/ CYSTEINE SYNTHASE/ PYRIDOXAL PHOSPHATE BINDING |
AT5G15640 | PredictedGene fusion method | FSW = 0.3092
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT2G17640 | PredictedGene fusion method | FSW = 0.1088
| Unknown | ATSERAT31 ACETYLTRANSFERASE/ SERINE O-ACETYLTRANSFERASE |
AT3G52390 | PredictedGene fusion method | FSW = 0.0064
| Unknown | TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN |
AT5G47435 | PredictedGene fusion method | FSW = 0.1088
| Unknown | FORMYLTETRAHYDROFOLATE DEFORMYLASE PUTATIVE |
AT3G08910 | PredictedGene fusion method | FSW = 0.1031
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT1G73250 | PredictedGene fusion method | FSW = 0.2530
| Unknown | GER1 (GDP-4-KETO-6-DEOXYMANNOSE-35-EPIMERASE-4-REDUCTASE 1) GDP-L-FUCOSE SYNTHASE |
AT4G40070 | PredictedGene fusion method | FSW = 0.3478
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT1G12550 | PredictedGene fusion method | FSW = 0.1325
| Unknown | OXIDOREDUCTASE FAMILY PROTEIN |
AT3G45070 | PredictedGene fusion method | FSW = 0.0847
| Unknown | SULFOTRANSFERASE FAMILY PROTEIN |
AT3G51000 | PredictedGene fusion method | FSW = 0.0762
| Unknown | EPOXIDE HYDROLASE PUTATIVE |
AT2G31350 | PredictedGene fusion method | FSW = 0.1488
| Unknown | GLX2-5 (GLYOXALASE 2-5) HYDROXYACYLGLUTATHIONE HYDROLASE/ IRON ION BINDING / ZINC ION BINDING |
AT5G43380 | PredictedGene fusion method | FSW = 0.1391
| Unknown | TOPP6 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G28030 | PredictedGene fusion method | FSW = 0.1488
| Unknown | CYSTEINE SYNTHASE PUTATIVE / O-ACETYLSERINE (THIOL)-LYASE PUTATIVE / O-ACETYLSERINE SULFHYDRYLASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454