Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G06400 - ( CHR11 (CHROMATIN-REMODELING PROTEIN 11) ATP binding / DNA binding / DNA-dependent ATPase/ helicase/ hydrolase acting on acid anhydrides in phosphorus-containing anhydrides / nucleic acid binding / nucleosome binding )

9 Proteins interacs with AT3G06400
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G07790

Predicted

Affinity Capture-MS

FSW = 0.0174

Class C:

nucleus

HTB1 DNA BINDING
AT5G18620

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1273

Class C:

nucleus

CHR17 (CHROMATIN REMODELING FACTOR17) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / NUCLEOSOME BINDING
AT4G38130

Predicted

synthetic growth defect

synthetic growth defect

FSW = 0.0145

Class C:

nucleus

HD1 (HISTONE DEACETYLASE 1) BASAL TRANSCRIPTION REPRESSOR/ HISTONE DEACETYLASE/ PROTEIN BINDING
AT2G13370

Predicted

synthetic growth defect

Affinity Capture-MS

Affinity Capture-MS

synthetic growth defect

interaction prediction

FSW = 0.0282

Class C:

nucleus

CHR5 (CHROMATIN REMODELING 5) ATP BINDING / DNA BINDING / CHROMATIN BINDING / HELICASE/ NUCLEIC ACID BINDING
AT4G39160

Predicted

Phenotypic Enhancement

FSW = 0.0629

Class C:

nucleus

DNA BINDING / TRANSCRIPTION FACTOR
AT5G53480

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0196

Unknown

IMPORTIN BETA-2 PUTATIVE
AT5G53770

Predicted

synthetic growth defect

FSW = 0.0492

Unknown

NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN
AT5G59440

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0602

Unknown

ZEU1 (ZEUS1) ATP BINDING / THYMIDYLATE KINASE
AT3G53650

Predicted

interaction prediction

FSW = 0.0317

Unknown

HISTONE H2B PUTATIVE

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454