Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G02310 - ( PRT6 (PROTEOLYSIS 6) ubiquitin-protein ligase )
23 Proteins interacs with AT5G02310Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G63110 | Predictedinterologs mapping | FSW = 0.0555
| Unknown | HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE |
AT5G56030 | PredictedAffinity Capture-MS | FSW = 0.0161
| Unknown | HSP81-2 (HEAT SHOCK PROTEIN 81-2) ATP BINDING |
AT3G12110 | PredictedPhenotypic Enhancement | FSW = 0.0462
| Unknown | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G53750 | Predictedsynthetic growth defect | FSW = 0.0066
| Unknown | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
AT2G40360 | PredictedAffinity Capture-MS | FSW = 0.0150
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G24490 | PredictedPhenotypic Suppression | FSW = 0.0236
| Unknown | RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING |
AT3G57660 | PredictedPhenotypic Suppression | FSW = 0.0140
| Unknown | NRPA1 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ ZINC ION BINDING |
AT1G03190 | PredictedPhenotypic Enhancement | FSW = 0.0462
| Unknown | UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING |
AT1G14980 | Predictedtwo hybrid | FSW = 0.0342
| Unknown | CPN10 (CHAPERONIN 10) CHAPERONE BINDING |
AT1G75510 | PredictedPhenotypic Suppression | FSW = 0.0442
| Unknown | TRANSCRIPTION INITIATION FACTOR IIF BETA SUBUNIT (TFIIF-BETA) FAMILY PROTEIN |
AT3G56340 | Predictedtwo hybrid | FSW = 0.0171
| Unknown | 40S RIBOSOMAL PROTEIN S26 (RPS26C) |
AT5G62540 | PredictedAffinity Capture-Western | FSW = 0.0476
| Unknown | UBC3 (UBIQUITIN-CONJUGATING ENZYME 3) UBIQUITIN-PROTEIN LIGASE |
AT3G54380 | PredictedPhenotypic Suppression | FSW = 0.1131
| Unknown | SAC3/GANP FAMILY PROTEIN |
AT1G08780 | PredictedPhenotypic Suppression | FSW = 0.0823
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
AT1G29990 | PredictedPhenotypic Suppression | FSW = 0.0709
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT2G02760 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.0503
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT3G05170 | PredictedAffinity Capture-MS | FSW = 0.1231
| Unknown | PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE FAMILY PROTEIN |
AT3G22142 | PredictedPhenotypic Enhancement | FSW = 0.2004
| Unknown | STRUCTURAL CONSTITUENT OF CELL WALL |
AT3G26020 | PredictedPhenotypic Enhancement | FSW = 0.0873
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B PUTATIVE |
AT5G10260 | PredictedPhenotypic Suppression | FSW = 0.0834
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G23290 | PredictedPhenotypic Suppression | FSW = 0.0563
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT5G13780 | PredictedPhenotypic Suppression | FSW = 0.0739
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT5G41880 | PredictedPhenotypic Suppression | FSW = 0.0169
| Unknown | POLA3 DNA PRIMASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454