Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G55070 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN chloroplast EXPRESSED IN 24 plant structures EXPRESSED DURING 15 growth stages CONTAINS InterPro DOMAIN/s CTLH C-terminal to LisH motif (InterProIPR006595) LisH dimerisation motif (InterProIPR006594) CT11-RanBPM (InterProIPR013144) BEST Arabidopsis thaliana protein match is protein binding / zinc ion binding (TAIRAT4G378801) Has 669 Blast hits to 649 proteins in 147 species Archae - 0 Bacteria - 0 Metazoa - 334 Fungi - 200 Plants - 87 Viruses - 0 Other Eukaryotes - 48 (source NCBI BLink) )

14 Proteins interacs with AT3G55070
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G32410

Predicted

two hybrid

FSW = 0.0618

Unknown

CESA1 (CELLULOSE SYNTHASE 1) CELLULOSE SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT1G09100

Predicted

two hybrid

FSW = 0.0488

Unknown

RPT5B (26S PROTEASOME AAA-ATPASE SUBUNIT RPT5B) ATPASE/ CALMODULIN BINDING
AT3G05530

Predicted

interaction prediction

FSW = 0.0400

Unknown

RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A) ATPASE/ CALMODULIN BINDING
AT3G29800

Predicted

two hybrid

FSW = 0.0214

Unknown

AAA-TYPE ATPASE FAMILY
AT1G59900

Predicted

Phenotypic Enhancement

FSW = 0.0556

Unknown

AT-E1 ALPHA OXIDOREDUCTASE ACTING ON THE ALDEHYDE OR OXO GROUP OF DONORS DISULFIDE AS ACCEPTOR / PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING)
AT2G39630

Predicted

interaction prediction

two hybrid

FSW = 0.0235

Unknown

GLYCOSYL TRANSFERASE FAMILY 2 PROTEIN
AT2G29540

Predicted

two hybrid

FSW = 0.0070

Unknown

ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT1G61150

Predicted

two hybrid

two hybrid

FSW = 0.2591

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S LISH DIMERISATION MOTIF SUBGROUP (INTERPROIPR013720) CTLH C-TERMINAL TO LISH MOTIF (INTERPROIPR006595) LISH DIMERISATION MOTIF (INTERPROIPR006594) CT11-RANBPM (INTERPROIPR013144) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G111101) HAS 740 BLAST HITS TO 708 PROTEINS IN 137 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 401 FUNGI - 144 PLANTS - 139 VIRUSES - 0 OTHER EUKARYOTES - 56 (SOURCE NCBI BLINK)
AT4G09300

Predicted

two hybrid

FSW = 0.1559

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN FLOWER EXPRESSED DURING PETAL DIFFERENTIATION AND EXPANSION STAGE CONTAINS INTERPRO DOMAIN/S LISH DIMERISATION MOTIF SUBGROUP (INTERPROIPR013720) CTLH C-TERMINAL TO LISH MOTIF (INTERPROIPR006595) LISH DIMERISATION MOTIF (INTERPROIPR006594) CT11-RANBPM (INTERPROIPR013144) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G611506) HAS 369 BLAST HITS TO 369 PROTEINS IN 108 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 175 FUNGI - 55 PLANTS - 90 VIRUSES - 0 OTHER EUKARYOTES - 47 (SOURCE NCBI BLINK)
AT2G22690

Predicted

Affinity Capture-MS

FSW = 0.3117

Unknown

PROTEIN BINDING / ZINC ION BINDING
AT2G40110

Predicted

Affinity Capture-MS

FSW = 0.2273

Unknown

YIPPEE FAMILY PROTEIN
AT5G08560

Predicted

Affinity Capture-MS

FSW = 0.3117

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G45430

Predicted

two hybrid

FSW = 0.0529

Unknown

PROTEIN KINASE PUTATIVE
AT4G27740

Predicted

Affinity Capture-MS

FSW = 0.1981

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S YIPPEE-LIKE PROTEIN (INTERPROIPR004910) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G277451) HAS 684 BLAST HITS TO 682 PROTEINS IN 148 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 389 FUNGI - 132 PLANTS - 111 VIRUSES - 0 OTHER EUKARYOTES - 52 (SOURCE NCBI BLINK)

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454