Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G75380 - ( wound-responsive protein-related )
18 Proteins interacs with AT1G75380Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G16660 | PredictedPhenotypic Enhancement | FSW = 0.0290
| Unknown | HEAT SHOCK PROTEIN 70 PUTATIVE / HSP70 PUTATIVE |
AT5G54770 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.2225
| Unknown | THI1 PROTEIN HOMODIMERIZATION |
AT4G04340 | PredictedPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancementtwo hybridReconstituted Complex | FSW = 0.2561
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT1G76810 | Predictedinterologs mapping | FSW = 0.0298
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 FAMILY PROTEIN / EIF-2 FAMILY PROTEIN |
AT1G07180 | PredictedPhenotypic Enhancement | FSW = 0.1093
| Unknown | NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) NADH DEHYDROGENASE |
AT2G36170 | PredictedPhenotypic EnhancementSynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.1737
| Unknown | UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A) |
AT3G14270 | PredictedAffinity Capture-MSPhenotypic Enhancementtwo hybridtwo hybridtwo hybridtwo hybridReconstituted ComplexReconstituted ComplexReconstituted ComplexAffinity Capture-MSAffinity Capture-MSCo-purificationCo-purificationtwo hybridtwo hybridAffinity Capture-WesternReconstituted Complextwo hybridCo-purificationinterologs mappingPhenotypic Enhancement | FSW = 0.3537
| Unknown | PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE FAMILY PROTEIN |
AT1G05180 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.1483
| Unknown | AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME |
AT1G19730 | Predictedinterologs mapping | FSW = 0.0823
| Unknown | ATTRX4 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT1G07820 | PredictedPhenotypic Enhancement | FSW = 0.0926
| Unknown | HISTONE H4 |
AT3G11530 | PredictedPhenotypic Enhancement | FSW = 0.0896
| Unknown | VACUOLAR PROTEIN SORTING 55 FAMILY PROTEIN / VPS55 FAMILY PROTEIN |
AT3G18850 | PredictedAffinity Capture-MS | FSW = 0.0132
| Unknown | LPAT5 ACYLTRANSFERASE |
AT3G21300 | Predictedtwo hybrid | FSW = 0.0410
| Unknown | RNA METHYLTRANSFERASE FAMILY PROTEIN |
AT5G38820 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.4629
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT1G80500 | PredictedPhenotypic Enhancement | FSW = 0.1999
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN TRANSPORT ER TO GOLGI VESICLE-MEDIATED TRANSPORT LOCATED IN INTRACELLULAR EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SEDLIN (INTERPROIPR006722) LONGIN-LIKE (INTERPROIPR011012) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G209301) HAS 437 BLAST HITS TO 435 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 248 FUNGI - 75 PLANTS - 53 VIRUSES - 0 OTHER EUKARYOTES - 61 (SOURCE NCBI BLINK) |
AT1G80510 | PredictedAffinity Capture-MS | FSW = 0.0568
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT5G01770 | PredictedPhenotypic Enhancement | FSW = 0.1717
| Unknown | RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING |
AT5G14180 | PredictedPhenotypic Suppression | FSW = 0.0180
| Unknown | MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454