Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G18870 - ( ICS2 (ISOCHORISMATE SYNTHASE 2) isochorismate synthase )
46 Proteins interacs with AT1G18870Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G01280 | PredictedAffinity Capture-MSAffinity Capture-MSReconstituted ComplexReconstituted ComplexAffinity Capture-MSSynthetic Lethality | FSW = 0.2950
| Class C:plastid | VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL |
AT3G49910 | PredictedAffinity Capture-MS | FSW = 0.0074
| Class C:plastid | 60S RIBOSOMAL PROTEIN L26 (RPL26A) |
AT1G74710 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0090
| Class C:plastid | ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE |
AT1G16880 | PredictedAffinity Capture-MS | FSW = 0.2127
| Class C:plastid | URIDYLYLTRANSFERASE-RELATED |
AT5G35790 | PredictedAffinity Capture-MS | FSW = 0.0220
| Class C:plastid | G6PD1 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 1) GLUCOSE-6-PHOSPHATE DEHYDROGENASE |
AT1G80030 | PredictedSynthetic Lethality | FSW = 0.0063
| Class C:plastid | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT1G31190 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2127
| Class C:plastid | IMPL1 (MYO-INOSITOL MONOPHOSPHATASE LIKE 1) 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE/ INOSITOL-1(OR 4)-MONOPHOSPHATASE |
AT1G11260 | Predictedtwo hybrid | FSW = 0.0484
| Unknown | STP1 (SUGAR TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G14010 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4006
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G45145 | Predictedtwo hybrid | FSW = 0.0068
| Unknown | ATTRX5 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT4G04720 | PredictedAffinity Capture-MS | FSW = 0.2084
| Unknown | CPK21 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G25800 | PredictedAffinity Capture-MS | FSW = 0.1245
| Unknown | PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT2G19760 | PredictedAffinity Capture-MS | FSW = 0.0126
| Unknown | PRF1 (PROFILIN 1) ACTIN BINDING |
AT5G41060 | PredictedAffinity Capture-MS | FSW = 0.0172
| Unknown | ZINC FINGER (DHHC TYPE) FAMILY PROTEIN |
AT5G45380 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4571
| Unknown | SODIUMSOLUTE SYMPORTER FAMILY PROTEIN |
AT3G11730 | PredictedAffinity Capture-MS | FSW = 0.0153
| Unknown | ATFP8 GTP BINDING / GTP-DEPENDENT PROTEIN BINDING / MYOSIN XI TAIL BINDING |
AT3G46900 | PredictedAffinity Capture-MS | FSW = 0.2760
| Unknown | COPT2 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER |
AT1G70580 | PredictedAffinity Capture-MStwo hybrid | FSW = 0.0519
| Unknown | AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2) L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE/ GLYCINE2-OXOGLUTARATE AMINOTRANSFERASE |
AT4G14340 | PredictedAffinity Capture-MS | FSW = 0.3126
| Unknown | CKI1 (CASEIN KINASE I) KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G59960 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4008
| Unknown | UNKNOWN PROTEIN |
AT1G75560 | PredictedAffinity Capture-MS | FSW = 0.0257
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT4G13980 | Predictedbiochemical | FSW = 0.0106
| Unknown | AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR |
AT2G34440 | Predictedtwo hybrid | FSW = 0.0172
| Unknown | AGL29 (AGAMOUS-LIKE 29) TRANSCRIPTION FACTOR |
AT1G30810 | PredictedAffinity Capture-MS | FSW = 0.4506
| Unknown | TRANSCRIPTION FACTOR |
AT3G08980 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4118
| Unknown | SIGNAL PEPTIDASE I FAMILY PROTEIN |
AT3G55605 | PredictedAffinity Capture-MS | FSW = 0.1605
| Unknown | MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN |
AT2G38960 | PredictedAffinity Capture-MS | FSW = 0.2319
| Unknown | AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING |
AT4G17190 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0998
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G06790 | PredictedAffinity Capture-MS | FSW = 0.2515
| Unknown | RNA POLYMERASE RPB7 N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT3G05760 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3276
| Unknown | NUCLEIC ACID BINDING / ZINC ION BINDING |
AT3G53880 | PredictedAffinity Capture-MSCo-purification | FSW = 0.2987
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT4G00810 | Predictedtwo hybrid | FSW = 0.3023
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1B) |
AT5G16960 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mapping | FSW = 0.4251
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G59890 | PredictedAffinity Capture-MSAffinity Capture-MStwo hybridReconstituted Complextwo hybridtwo hybridAffinity Capture-MSAffinity Capture-MStwo hybridReconstituted Complex | FSW = 0.3284
| Unknown | ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) ACTIN BINDING |
AT1G63660 | Predictedtwo hybrid | FSW = 0.0695
| Unknown | GMP SYNTHASE (GLUTAMINE-HYDROLYZING) PUTATIVE / GLUTAMINE AMIDOTRANSFERASE PUTATIVE |
AT2G20410 | PredictedAffinity Capture-MS | FSW = 0.3606
| Unknown | ACTIVATING SIGNAL COINTEGRATOR-RELATED |
AT2G29940 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3991
| Unknown | PDR3 (PLEIOTROPIC DRUG RESISTANCE 3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT2G35390 | PredictedAffinity Capture-MS | FSW = 0.0114
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT3G12490 | Predictedtwo hybrid | FSW = 0.0469
| Unknown | CYSTEINE PROTEASE INHIBITOR PUTATIVE / CYSTATIN PUTATIVE |
AT3G47120 | PredictedAffinity Capture-MS | FSW = 0.0220
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT4G00980 | PredictedAffinity Capture-MS | FSW = 0.0330
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT4G23420 | Predictedtwo hybrid | FSW = 0.0240
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT4G26510 | PredictedAffinity Capture-MS | FSW = 0.0167
| Unknown | ATP BINDING / KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / URACIL PHOSPHORIBOSYLTRANSFERASE |
AT4G29910 | PredictedAffinity Capture-MS | FSW = 0.2432
| Unknown | ORC5 (ORIGIN RECOGNITION COMPLEX PROTEIN 5) PROTEIN BINDING |
AT5G41610 | PredictedAffinity Capture-MS | FSW = 0.0379
| Unknown | ATCHX18 MONOVALENT CATIONPROTON ANTIPORTER/ SODIUMHYDROGEN ANTIPORTER |
AT5G52350 | Predictedtwo hybrid | FSW = 0.0220
| Unknown | ATEXO70A3 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN A3) PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454