Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G23420 - ( short-chain dehydrogenase/reductase (SDR) family protein )
26 Proteins interacs with AT4G23420Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0042
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G10350 | PredictedPhenotypic Enhancement | FSW = 0.0176
| Unknown | POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN |
AT4G23430 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.1162
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT1G18870 | Predictedtwo hybrid | FSW = 0.0240
| Unknown | ICS2 (ISOCHORISMATE SYNTHASE 2) ISOCHORISMATE SYNTHASE |
AT5G60540 | PredictedPhenotypic Enhancement | FSW = 0.0710
| Unknown | PDX2 (PYRIDOXINE BIOSYNTHESIS 2) GLUTAMINASE/ GLUTAMINYL-TRNA SYNTHASE (GLUTAMINE-HYDROLYZING)/ PROTEIN HETERODIMERIZATION |
AT4G25340 | PredictedPhenotypic Suppression | FSW = 0.0563
| Unknown | IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
AT2G30160 | PredictedPhenotypic Enhancement | FSW = 0.0908
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT4G17190 | PredictedPhenotypic Enhancement | FSW = 0.0509
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT3G44010 | Predictedtwo hybridtwo hybrid | FSW = 0.0251
| Unknown | 40S RIBOSOMAL PROTEIN S29 (RPS29B) |
AT1G29970 | PredictedPhenotypic Suppression | FSW = 0.0661
| Unknown | RPL18AA (60S RIBOSOMAL PROTEIN L18A-1) |
AT2G37420 | PredictedPhenotypic Enhancement | FSW = 0.1061
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT3G50780 | PredictedPhenotypic Enhancement | FSW = 0.0632
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PRLI-INTERACTING FACTOR-RELATED (TAIRAT1G638501) HAS 173 BLAST HITS TO 173 PROTEINS IN 14 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 8 FUNGI - 0 PLANTS - 164 VIRUSES - 0 OTHER EUKARYOTES - 1 (SOURCE NCBI BLINK) |
AT1G02730 | Predictedtwo hybrid | FSW = 0.0108
| Unknown | ATCSLD5 14-BETA-D-XYLAN SYNTHASE/ CELLULOSE SYNTHASE |
AT3G59540 | PredictedSynthetic Lethality | FSW = 0.0387
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
AT5G14060 | PredictedSynthetic Lethality | FSW = 0.0940
| Unknown | CARAB-AK-LYS AMINO ACID BINDING / ASPARTATE KINASE |
AT5G16170 | Predictedsynthetic growth defect | FSW = 0.0084
| Unknown | UNKNOWN PROTEIN |
AT5G04800 | PredictedPhenotypic Enhancement | FSW = 0.0502
| Unknown | 40S RIBOSOMAL PROTEIN S17 (RPS17D) |
AT4G11410 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.4717
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT4G24050 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.5405
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT5G02540 | PredictedPhylogenetic profile method | FSW = 0.5405
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT1G64590 | PredictedPhylogenetic profile method | FSW = 0.4700
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT5G04070 | PredictedPhylogenetic profile method | FSW = 0.5000
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT2G37540 | PredictedPhylogenetic profile method | FSW = 0.1873
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT4G09750 | PredictedPhylogenetic profile method | FSW = 0.3206
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT5G53090 | PredictedPhylogenetic profile method | FSW = 0.5000
| Unknown | BINDING / CATALYTIC/ OXIDOREDUCTASE |
AT5G61830 | PredictedGene fusion method | FSW = 0.0613
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454