Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G47810 - ( MAG1 (MAIGO 1) hydrolase/ protein serine/threonine phosphatase )
22 Proteins interacs with AT3G47810Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G17790 | Experimental | FSW = 0.5051
| Unknown | VPS35A (VPS35 HOMOLOG A) |
AT5G53530 | Experimental | FSW = 0.3310
| Unknown | VPS26A (VACUOLAR PROTEIN SORTING 26A) |
AT4G27690 | Experimental | FSW = 0.4602
| Unknown | VPS26B (VACUOLAR PROTEIN SORTING 26B) |
AT5G06140 | Experimental | FSW = 0.1152
| Unknown | SNX1 (SORTING NEXIN 1) PHOSPHOINOSITIDE BINDING / PROTEIN BINDING |
AT1G75850 | Experimentalaffinity technologyAffinity Capture-Western | FSW = 0.3630
| Unknown | VPS35B (VPS35 HOMOLOG B) |
AT2G44610 | Predictedinteraction prediction | FSW = 0.0611
| Unknown | RAB6A GTP BINDING / PROTEIN BINDING |
AT1G11680 | PredictedSynthetic Lethality | FSW = 0.0169
| Unknown | CYP51G1 (CYTOCHROME P450 51G1) OXYGEN BINDING / STEROL 14-DEMETHYLASE |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0114
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT2G06210 | Predictedtwo hybridinteraction prediction | FSW = 0.0671
| Unknown | ELF8 (EARLY FLOWERING 8) BINDING |
AT2G22290 | PredictedSynthetic Lethality | FSW = 0.0804
| Unknown | ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING |
AT5G57210 | Predictedtwo hybrid | FSW = 0.0368
| Unknown | MICROTUBULE-ASSOCIATED PROTEIN-RELATED |
AT4G29950 | Predictedtwo hybrid | FSW = 0.0345
| Unknown | MICROTUBULE-ASSOCIATED PROTEIN |
AT3G02580 | PredictedSynthetic Lethality | FSW = 0.1452
| Unknown | STE1 (STEROL 1) C-5 STEROL DESATURASE |
AT5G35430 | Predictedtwo hybridtwo hybrid | FSW = 0.0376
| Unknown | BINDING |
AT3G51310 | Predictedtwo hybridtwo hybridinteraction prediction | FSW = 0.3150
| Unknown | VPS35C (VPS35 HOMOLOG C) |
AT1G08780 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0713
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
AT1G29990 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0401
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT3G22480 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0653
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT5G10260 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.0857
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G23290 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0842
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT5G23395 | PredictedAffinity Capture-MS | FSW = 0.0775
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST CONTAINS INTERPRO DOMAIN/S CHCH (INTERPROIPR010625) HAS 224 BLAST HITS TO 224 PROTEINS IN 106 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 109 FUNGI - 94 PLANTS - 20 VIRUSES - 0 OTHER EUKARYOTES - 1 (SOURCE NCBI BLINK) |
AT5G49510 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0460
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454