Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G07810 - ( ECA1 (ER-TYPE CA2+-ATPASE 1) calcium-transporting ATPase )
35 Proteins interacs with AT1G07810Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G09630 | PredictedPhenotypic Suppression | FSW = 0.0168
| Class C:vacuoleplasma membrane | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT3G57330 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.3130
| Class C:vacuoleplasma membrane | ACA11 (AUTOINHIBITED CA2+-ATPASE 11) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING |
AT2G41560 | PredictedShared biological functionEnriched domain pairPhylogenetic profile method | FSW = 0.3000
| Class C:vacuole | ACA4 (AUTO-INHIBITED CA(2+)-ATPASE ISOFORM 4) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0137
| Class C:vacuole | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT1G27770 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile method | FSW = 0.2250
| Class C:plasma membraneendoplasmic reticulum | ACA1 (AUTO-INHIBITED CA2+-ATPASE 1) CALCIUM CHANNEL/ CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING |
AT4G37640 | PredictedShared biological functionEnriched domain pairPhylogenetic profile method | FSW = 0.2899
| Class C:plasma membraneendoplasmic reticulum | ACA2 (CALCIUM ATPASE 2) CALCIUM ION TRANSMEMBRANE TRANSPORTER/ CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING |
AT5G08570 | PredictedPhenotypic Enhancement | FSW = 0.0237
| Class C:plasma membrane | PYRUVATE KINASE PUTATIVE |
AT5G23900 | PredictedPhenotypic Enhancement | FSW = 0.0118
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L13 (RPL13D) |
AT1G10130 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile method | FSW = 0.0870
| Class C:endoplasmic reticulum | ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE |
AT3G54840 | PredictedPhenotypic Suppression | FSW = 0.0667
| Class C:endoplasmic reticulum | ARA6 GTP BINDING / GTPASE |
AT4G00900 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.2769
| Class C:endoplasmic reticulum | ECA2 (ER-TYPE CA2+-ATPASE 2) CALCIUM-TRANSPORTING ATPASE |
AT5G15450 | PredictedPhenotypic Enhancement | FSW = 0.0550
| Unknown | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G41370 | PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0950
| Unknown | XPB1 (ARABIDOPSIS HOMOLOG OF XERODERMA PIGMENTOSUM COMPLEMENTATION GROUP B 1) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE/ NUCLEIC ACID BINDING |
AT2G19980 | PredictedPhenotypic Enhancement | FSW = 0.0537
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT3G63380 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.3273
| Unknown | CALCIUM-TRANSPORTING ATPASE PLASMA MEMBRANE-TYPE PUTATIVE / CA(2+)-ATPASE PUTATIVE (ACA12) |
AT2G22950 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.3273
| Unknown | CALCIUM-TRANSPORTING ATPASE PLASMA MEMBRANE-TYPE PUTATIVE / CA2+-ATPASE PUTATIVE (ACA7) |
AT2G05840 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0909
| Unknown | PAA2 (20S PROTEASOME SUBUNIT PAA2) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G17190 | PredictedAffinity Capture-MS | FSW = 0.0620
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G29970 | PredictedPhenotypic Suppression | FSW = 0.0250
| Unknown | RPL18AA (60S RIBOSOMAL PROTEIN L18A-1) |
AT1G43080 | Predictedtwo hybrid | FSW = 0.0140
| Unknown | GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN |
AT2G37670 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1823
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT2G47760 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1144
| Unknown | ALG3 ALPHA-13-MANNOSYLTRANSFERASE/ CATALYTIC |
AT3G18520 | PredictedPhenotypic Enhancement | FSW = 0.0168
| Unknown | HDA15 HISTONE DEACETYLASE |
AT1G09810 | PredictedPhenotypic Enhancement | FSW = 0.0248
| Unknown | ECT11 (EVOLUTIONARILY CONSERVED C-TERMINAL REGION 11) |
AT1G21370 | PredictedPhenotypic Enhancement | FSW = 0.0365
| Unknown | UNKNOWN PROTEIN |
AT1G31300 | PredictedPhenotypic Enhancement | FSW = 0.0566
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G196452) HAS 478 BLAST HITS TO 478 PROTEINS IN 104 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 269 FUNGI - 98 PLANTS - 80 VIRUSES - 0 OTHER EUKARYOTES - 31 (SOURCE NCBI BLINK) |
AT1G80510 | PredictedPhenotypic Enhancement | FSW = 0.0327
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT2G40010 | PredictedPhenotypic Enhancement | FSW = 0.0154
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0A) |
AT3G11240 | PredictedPhenotypic Enhancement | FSW = 0.0276
| Unknown | ATE2 (ARGININE-TRNA PROTEIN TRANSFERASE 2) ARGINYLTRANSFERASE |
AT3G24495 | PredictedPhenotypic Enhancement | FSW = 0.0175
| Unknown | MSH7 (MUTS HOMOLOG 7) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING |
AT5G01770 | PredictedPhenotypic Enhancement | FSW = 0.0390
| Unknown | RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING |
AT5G05070 | PredictedPhenotypic Enhancement | FSW = 0.0128
| Unknown | ZINC ION BINDING |
AT5G14180 | PredictedPhenotypic Enhancement | FSW = 0.0480
| Unknown | MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC |
AT5G53300 | PredictedPhenotypic Enhancement | FSW = 0.0215
| Unknown | UBC10 (UBIQUITIN-CONJUGATING ENZYME 10) UBIQUITIN-PROTEIN LIGASE |
AT5G54670 | Predictedinteraction prediction | FSW = 0.0111
| Unknown | ATK3 (ARABIDOPSIS THALIANA KINESIN 3) ATPASE/ MICROTUBULE BINDING / MICROTUBULE MOTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454