Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G71830 - ( SERK1 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1) kinase/ transmembrane receptor protein serine/threonine kinase )
16 Proteins interacs with AT1G71830| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G09840
   | Experimentaltwo hybridtwo hybridfluorescence acceptor donor pairfluorescence acceptor donor pairprotein kinase assayprotein kinase assayconfocal microscopypull downfluorescence acceptor donor pairReconstituted ComplexbiochemicalAffinity Capture-MSAffinity Capture-Westerntwo hybridin vitro | FSW = 0.0635
| Class A:plasma membraneendoplasmic reticulumClass B:unclearnucleuscytosolClass D:cytosol (p = 0.67) | CDC48 (CELL DIVISION CYCLE 48) ATPASE/ IDENTICAL PROTEIN BINDING |
| AT4G39400
| Experimentalcoimmunoprecipitationin vitroAffinity Capture-MSbiochemicalbiochemicalfluorescence acceptor donor pairAffinity Capture-Westerncoimmunoprecipitationaffinity technology | FSW = 0.1793
| Class A:plasma membraneClass B:vacuoleunclearendoplasmic reticulumClass D:extracellular (p = 0.86)endoplasmic reticulum (p = 0.46)cytosol (p = 0.67) | BRI1 (BRASSINOSTEROID INSENSITIVE 1) KINASE/ PROTEIN BINDING / PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT5G10450
| Experimentaltwo hybridconfocal microscopypull downprotein kinase assayReconstituted Complexbiochemicalfluorescence acceptor donor pairin vitro | FSW = 0.0270
| Class A:plasma membraneClass B:unclearplastidperoxisomenucleusendoplasmic reticulumcytosolClass D:cytosol (p = 0.67) | GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
| AT3G02520
| ExperimentalcoimmunoprecipitationAffinity Capture-MSAffinity Capture-Western | FSW = 0.0205
| Class A:plasma membraneClass B:unclearplastidendoplasmic reticulumClass D:cytosol (p = 0.67) | GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
| AT4G33430
| ExperimentalAffinity Capture-MSfluorescence acceptor donor pair | FSW = 0.1172
| Class A:plasma membraneClass B:unclearextracellularendoplasmic reticulumClass D:plasma membrane (p = 0.25)extracellular (p = 0.86)endoplasmic reticulum (p = 0.46)cytosol (p = 0.67) | BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE) KINASE/ PROTEIN BINDING / PROTEIN HETERODIMERIZATION/ PROTEIN SERINE/THREONINE KINASE |
| AT5G19280
| Experimentaltwo hybridtwo hybridReconstituted ComplexAffinity Capture-MSfluorescence acceptor donor pairfluorescence acceptor donor paircoimmunoprecipitationtwo hybrid | FSW = 0.2165
| Class A:plasma membraneClass B:unclearendoplasmic reticulumClass D:plastid (p = 0.78)extracellular (p = 0.86)endoplasmic reticulum (p = 0.46)cytosol (p = 0.67) | KAPP (KINASE ASSOCIATED PROTEIN PHOSPHATASE) PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN KINASE BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
| AT5G13790
| ExperimentalAffinity Capture-MS | FSW = 0.0401
| Class A:plasma membraneClass B:unclearendoplasmic reticulumClass D:plastid (p = 0.78) | AGL15 (AGAMOUS-LIKE 15) DNA BINDING / TRANSCRIPTION FACTOR |
| AT1G34210
| Experimentalfluorescence acceptor donor pairfluorescence acceptor donor pair | FSW = 0.0936
| Class A:plasma membraneClass B:unclearendoplasmic reticulumClass D:plasma membrane (p = 0.25)extracellular (p = 0.86)endoplasmic reticulum (p = 0.46)cytosol (p = 0.67) | SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2) KINASE |
| AT2G33500
| ExperimentalAffinity Capture-MS | FSW = 0.1404
| Class A:plasma membraneClass B:unclearendoplasmic reticulum | ZINC FINGER (B-BOX TYPE) FAMILY PROTEIN |
| AT3G54840
| Experimentalconfocal microscopy | FSW = 0.0050
| Class A:endoplasmic reticulumClass B:unclearplasma membraneendosomeClass D:plastid (p = 0.78) | ARA6 GTP BINDING / GTPASE |
| AT5G16590
| PredictedGene fusion method | FSW = 0.5444
| Class C:plasma membrane | LRR1 ATP BINDING / KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT1G11050
| PredictedGene fusion method | FSW = 0.1910
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
| AT4G28670
| PredictedGene fusion method | FSW = 0.4545
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
| AT5G27950
| PredictedGene fusion method | FSW = 0.3810
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
| AT2G21470
| PredictedGene fusion method | FSW = 0.1385
| Unknown | SAE2 (SUMO-ACTIVATING ENZYME 2) SUMO ACTIVATING ENZYME |
| AT2G36980
| PredictedGene fusion method | FSW = 0.3403
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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