Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G60660 - ( PIP24 (PLASMA MEMBRANE INTRINSIC PROTEIN 24) water channel )
20 Proteins interacs with AT5G60660| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G26520
   | PredictedPhylogenetic profile methodCo-expression | FSW = 0.8395
| Class C:plasma membrane | TIP2 (TONOPLAST INTRINSIC PROTEIN 2) WATER CHANNEL |
| AT3G16240
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.6627
| Class C:plasma membrane | DELTA-TIP AMMONIA TRANSPORTER/ METHYLAMMONIUM TRANSMEMBRANE TRANSPORTER/ WATER CHANNEL |
| AT2G37170
| PredictedPhylogenetic profile method | FSW = 0.9500
| Class C:plasma membrane | PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2) WATER CHANNEL |
| AT4G35100
| PredictedPhylogenetic profile method | FSW = 0.9025
| Class C:plasma membrane | PIP3 (PLASMA MEMBRANE INTRINSIC PROTEIN 3) WATER CHANNEL |
| AT2G39010
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.9500
| Class C:plasma membrane | PIP2E (PLASMA MEMBRANE INTRINSIC PROTEIN 2E) WATER CHANNEL |
| AT3G53420
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.8022
| Class C:plasma membrane | PIP2A (PLASMA MEMBRANE INTRINSIC PROTEIN 2A) WATER CHANNEL |
| AT2G45960
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.4680
| Class C:plasma membrane | PIP1B (NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B) WATER CHANNEL |
| AT1G01620
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.6446
| Class C:plasma membrane | PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C) WATER CHANNEL |
| AT3G61430
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.3226
| Class C:plasma membrane | PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL |
| AT4G00430
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.8595
| Class C:plasma membrane | PIP14 (PLASMA MEMBRANE INTRINSIC PROTEIN 14) WATER CHANNEL |
| AT4G23400
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.9256
| Class C:plasma membrane | PIP15 (PLASMA MEMBRANE INTRINSIC PROTEIN 15) WATER CHANNEL |
| AT2G37180
| PredictedPhylogenetic profile method | FSW = 0.8947
| Class C:plasma membrane | RD28 (RESPONSIVE TO DESICCATION 28) WATER CHANNEL |
| AT2G16850
| PredictedPhylogenetic profile method | FSW = 0.7848
| Class C:plasma membrane | PIP28 (PLASMA MEMBRANE INTRINSIC PROTEIN 28) WATER CHANNEL |
| AT5G46630
| Predictedin vitro | FSW = 0.0331
| Class C:plasma membrane | CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT FAMILY PROTEIN |
| AT2G25810
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.8805
| Unknown | TIP41 (TONOPLAST INTRINSIC PROTEIN 41) WATER CHANNEL |
| AT2G36830
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.8805
| Unknown | GAMMA-TIP (GAMMA TONOPLAST INTRINSIC PROTEIN) WATER CHANNEL |
| AT1G17810
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.4004
| Unknown | BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) WATER CHANNEL |
| AT3G54820
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.5823
| Unknown | PIP25 (PLASMA MEMBRANE INTRINSIC PROTEIN 25) WATER CHANNEL |
| AT3G47440
| PredictedPhylogenetic profile method | FSW = 0.7912
| Unknown | TIP51 (TONOPLAST INTRINSIC PROTEIN 51) UREA TRANSMEMBRANE TRANSPORTER/ WATER CHANNEL |
| AT4G08320
| Predictedtwo hybrid | FSW = 0.0492
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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