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AT3G26520 - ( TIP2 (TONOPLAST INTRINSIC PROTEIN 2) water channel )

23 Proteins interacs with AT3G26520

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT2G37170	Predicted Shared biological function Phylogenetic profile method	FSW = 0.8340	Class C: vacuole plastid plasma membrane	PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2) WATER CHANNEL
AT4G35100	Predicted Phylogenetic profile method	FSW = 0.8869	Class C: vacuole plasma membrane	PIP3 (PLASMA MEMBRANE INTRINSIC PROTEIN 3) WATER CHANNEL
AT2G39010	Predicted Shared biological function Phylogenetic profile method Co-expression	FSW = 0.8340	Class C: vacuole plasma membrane	PIP2E (PLASMA MEMBRANE INTRINSIC PROTEIN 2E) WATER CHANNEL
AT2G25810	Predicted Phylogenetic profile method Co-expression	FSW = 0.9565	Class C: vacuole endoplasmic reticulum	TIP41 (TONOPLAST INTRINSIC PROTEIN 41) WATER CHANNEL
AT2G36830	Predicted Phylogenetic profile method Co-expression	FSW = 0.8658	Class C: vacuole	GAMMA-TIP (GAMMA TONOPLAST INTRINSIC PROTEIN) WATER CHANNEL
AT3G53420	Predicted Shared biological function Phylogenetic profile method Co-expression	FSW = 0.7013	Class C: plastid plasma membrane	PIP2A (PLASMA MEMBRANE INTRINSIC PROTEIN 2A) WATER CHANNEL
AT1G01620	Predicted Shared biological function Phylogenetic profile method Co-expression	FSW = 0.7133	Class C: plastid plasma membrane	PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C) WATER CHANNEL
AT2G45960	Predicted Shared biological function Phylogenetic profile method	FSW = 0.5612	Class C: plastid plasma membrane	PIP1B (NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B) WATER CHANNEL
AT3G61430	Predicted Shared biological function Phylogenetic profile method Co-expression	FSW = 0.3933	Class C: plasma membrane	PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL
AT4G23400	Predicted Phylogenetic profile method Co-expression	FSW = 0.8611	Class C: plasma membrane	PIP15 (PLASMA MEMBRANE INTRINSIC PROTEIN 15) WATER CHANNEL
AT4G00430	Predicted Shared biological function Phylogenetic profile method Co-expression	FSW = 0.9353	Class C: plasma membrane	PIP14 (PLASMA MEMBRANE INTRINSIC PROTEIN 14) WATER CHANNEL
AT5G60660	Predicted Phylogenetic profile method Co-expression	FSW = 0.8395	Class C: plasma membrane	PIP24 (PLASMA MEMBRANE INTRINSIC PROTEIN 24) WATER CHANNEL
AT2G37180	Predicted Shared biological function Phylogenetic profile method	FSW = 0.8293	Class C: plasma membrane	RD28 (RESPONSIVE TO DESICCATION 28) WATER CHANNEL
AT2G16850	Predicted Phylogenetic profile method	FSW = 0.7737	Class C: plasma membrane	PIP28 (PLASMA MEMBRANE INTRINSIC PROTEIN 28) WATER CHANNEL
AT4G18910	Predicted Phylogenetic profile method Co-expression	FSW = 0.6154	Class C: plasma membrane	NIP12 (NOD26-LIKE INTRINSIC PROTEIN 12) ARSENITE TRANSMEMBRANE TRANSPORTER/ WATER CHANNEL
AT4G01470	Predicted Phylogenetic profile method Co-expression	FSW = 0.2222	Unknown	TIP13 (TONOPLAST INTRINSIC PROTEIN 13) UREA TRANSMEMBRANE TRANSPORTER/ WATER CHANNEL
AT1G17810	Predicted Phylogenetic profile method Co-expression	FSW = 0.4278	Unknown	BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) WATER CHANNEL
AT5G37820	Predicted Phylogenetic profile method	FSW = 0.6400	Unknown	NIP42 (NOD26-LIKE INTRINSIC PROTEIN 42) WATER CHANNEL
AT1G31885	Predicted Phylogenetic profile method	FSW = 0.6400	Unknown	TRANSPORTER
AT3G47440	Predicted Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.8711	Unknown	TIP51 (TONOPLAST INTRINSIC PROTEIN 51) UREA TRANSMEMBRANE TRANSPORTER/ WATER CHANNEL
AT3G54820	Predicted Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.5416	Unknown	PIP25 (PLASMA MEMBRANE INTRINSIC PROTEIN 25) WATER CHANNEL
AT4G19030	Predicted Phylogenetic profile method Co-expression	FSW = 0.6400	Unknown	NLM1 ARSENITE TRANSMEMBRANE TRANSPORTER/ WATER CHANNEL
AT4G08320	Predicted two hybrid	FSW = 0.0440	Unknown	TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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AT3G26520 - ( TIP2 (TONOPLAST INTRINSIC PROTEIN 2) water channel )

Class C:

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Unknown

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Fasta sequences:

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FSW

C3

PEP

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