Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G35100 - ( PIP3 (PLASMA MEMBRANE INTRINSIC PROTEIN 3) water channel )

20 Proteins interacs with AT4G35100
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G26520

Predicted

Phylogenetic profile method

FSW = 0.8869

Class C:

vacuole

plasma membrane

TIP2 (TONOPLAST INTRINSIC PROTEIN 2) WATER CHANNEL
AT3G16240

Predicted

Phylogenetic profile method

FSW = 0.6627

Class C:

vacuole

plasma membrane

DELTA-TIP AMMONIA TRANSPORTER/ METHYLAMMONIUM TRANSMEMBRANE TRANSPORTER/ WATER CHANNEL
AT2G37170

Predicted

Phylogenetic profile method

FSW = 0.9500

Class C:

vacuole

plasma membrane

PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2) WATER CHANNEL
AT2G39010

Predicted

Phylogenetic profile method

FSW = 0.9500

Class C:

vacuole

plasma membrane

PIP2E (PLASMA MEMBRANE INTRINSIC PROTEIN 2E) WATER CHANNEL
AT2G25810

Predicted

Phylogenetic profile method

FSW = 0.8308

Class C:

vacuole

TIP41 (TONOPLAST INTRINSIC PROTEIN 41) WATER CHANNEL
AT2G36830

Predicted

Phylogenetic profile method

FSW = 0.8805

Class C:

vacuole

GAMMA-TIP (GAMMA TONOPLAST INTRINSIC PROTEIN) WATER CHANNEL
AT3G53420

Predicted

Phylogenetic profile method

FSW = 0.8022

Class C:

plasma membrane

PIP2A (PLASMA MEMBRANE INTRINSIC PROTEIN 2A) WATER CHANNEL
AT2G45960

Predicted

Phylogenetic profile method

FSW = 0.5346

Class C:

plasma membrane

PIP1B (NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B) WATER CHANNEL
AT1G01620

Predicted

Phylogenetic profile method

FSW = 0.7241

Class C:

plasma membrane

PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C) WATER CHANNEL
AT3G61430

Predicted

Phylogenetic profile method

FSW = 0.3717

Class C:

plasma membrane

PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL
AT4G23400

Predicted

Gene neighbors method

Phylogenetic profile method

FSW = 0.9756

Class C:

plasma membrane

PIP15 (PLASMA MEMBRANE INTRINSIC PROTEIN 15) WATER CHANNEL
AT4G00430

Predicted

Gene neighbors method

Phylogenetic profile method

FSW = 0.9545

Class C:

plasma membrane

PIP14 (PLASMA MEMBRANE INTRINSIC PROTEIN 14) WATER CHANNEL
AT2G37180

Predicted

Phylogenetic profile method

FSW = 0.8947

Class C:

plasma membrane

RD28 (RESPONSIVE TO DESICCATION 28) WATER CHANNEL
AT5G60660

Predicted

Phylogenetic profile method

FSW = 0.9025

Class C:

plasma membrane

PIP24 (PLASMA MEMBRANE INTRINSIC PROTEIN 24) WATER CHANNEL
AT2G16850

Predicted

Phylogenetic profile method

FSW = 0.8750

Class C:

plasma membrane

PIP28 (PLASMA MEMBRANE INTRINSIC PROTEIN 28) WATER CHANNEL
AT3G54820

Predicted

Phylogenetic profile method

FSW = 0.6194

Unknown

PIP25 (PLASMA MEMBRANE INTRINSIC PROTEIN 25) WATER CHANNEL
AT5G37820

Predicted

Phylogenetic profile method

FSW = 0.5610

Unknown

NIP42 (NOD26-LIKE INTRINSIC PROTEIN 42) WATER CHANNEL
AT1G17810

Predicted

Phylogenetic profile method

FSW = 0.4004

Unknown

BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) WATER CHANNEL
AT3G47440

Predicted

Phylogenetic profile method

FSW = 0.8869

Unknown

TIP51 (TONOPLAST INTRINSIC PROTEIN 51) UREA TRANSMEMBRANE TRANSPORTER/ WATER CHANNEL
AT1G31885

Predicted

Phylogenetic profile method

FSW = 0.6982

Unknown

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454