Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G37510 - ( EMB1467 (embryo defective 1467) NADH dehydrogenase (ubiquinone)/ NADH dehydrogenase/ electron carrier/ iron-sulfur cluster binding / oxidoreductase/ oxidoreductase acting on NADH or NADPH )

14 Proteins interacs with AT5G37510
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G47930

Experimental

biochemical

FSW = 0.1471

Class A:

mitochondrion

Class B:

unclear

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

ATGLDH (L-GALACTONO-14-LACTONE DEHYDOROGENASE) L-GULONO-14-LACTONE DEHYDROGENASE/ GALACTONOLACTONE DEHYDROGENASE
AT5G66510

Experimental

FSW = 0.1000

Class A:

mitochondrion

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3) CARBONATE DEHYDRATASE
AT2G33210

Predicted

pull down

FSW = 0.0270

Class C:

mitochondrion

HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING
AT4G02580

Predicted

pull down

FSW = 0.2500

Class C:

mitochondrion

NADH-UBIQUINONE OXIDOREDUCTASE 24 KDA SUBUNIT PUTATIVE
AT5G08530

Predicted

pull down

FSW = 0.5714

Class C:

mitochondrion

CI51 (51 KDA SUBUNIT OF COMPLEX I) 4 IRON 4 SULFUR CLUSTER BINDING / FMN BINDING / NAD OR NADH BINDING / NADH DEHYDROGENASE (UBIQUINONE)/ OXIDOREDUCTASE ACTING ON NADH OR NADPH
AT1G53240

Predicted

in vitro

Affinity Capture-MS

FSW = 0.0714

Class C:

mitochondrion

MALATE DEHYDROGENASE (NAD) MITOCHONDRIAL
AT5G09660

Predicted

in vitro

Affinity Capture-MS

FSW = 0.0288

Unknown

PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE
AT4G26300

Predicted

pull down

FSW = 0.0588

Unknown

EMB1027 (EMBRYO DEFECTIVE 1027) ATP BINDING / AMINOACYL-TRNA LIGASE/ ARGININE-TRNA LIGASE/ NUCLEOTIDE BINDING
AT1G22940

Predicted

pull down

FSW = 0.1250

Unknown

TH1 (THIAMINE REQUIRING 1) HYDROXYMETHYLPYRIMIDINE KINASE/ PHOSPHOMETHYLPYRIMIDINE KINASE/ THIAMIN-PHOSPHATE DIPHOSPHORYLASE
ATCG01110Predicted

blue native page

FSW = 0.0410

Unknown

ENCODES THE 49KDA PLASTID NAD(P)H DEHYDROGENASE SUBUNIT H PROTEIN ITS TRANSCRIPTION IS REGULATED BY AN NDHF-SPECIFIC PLASTID SIGMA FACTOR SIG4
AT1G25420

Predicted

two hybrid

two hybrid

FSW = 0.0325

Unknown

UNKNOWN PROTEIN
AT4G29440

Predicted

two hybrid

FSW = 0.0724

Unknown

UNKNOWN PROTEIN
AT2G40600

Predicted

pull down

FSW = 0.2353

Unknown

APPR-1-P PROCESSING ENZYME FAMILY PROTEIN
AT1G19290

Predicted

Gene fusion method

FSW = 0.0426

Unknown

LOCATED IN MITOCHONDRION EXPRESSED IN 12 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PENTATRICOPEPTIDE REPEAT (INTERPROIPR002885) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN (TAIRAT5G558401) HAS 31003 BLAST HITS TO 6161 PROTEINS IN 194 SPECIES ARCHAE - 6 BACTERIA - 22 METAZOA - 935 FUNGI - 736 PLANTS - 27904 VIRUSES - 0 OTHER EUKARYOTES - 1400 (SOURCE NCBI BLINK)

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Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454