Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G37510 - ( EMB1467 (embryo defective 1467) NADH dehydrogenase (ubiquinone)/ NADH dehydrogenase/ electron carrier/ iron-sulfur cluster binding / oxidoreductase/ oxidoreductase acting on NADH or NADPH )
14 Proteins interacs with AT5G37510Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G47930 | Experimentalbiochemical | FSW = 0.1471
| Class A:mitochondrionClass B:unclearClass D:plastid (p = 0.78)mitochondrion (p = 0.82) | ATGLDH (L-GALACTONO-14-LACTONE DEHYDOROGENASE) L-GULONO-14-LACTONE DEHYDROGENASE/ GALACTONOLACTONE DEHYDROGENASE |
AT5G66510 | Experimental | FSW = 0.1000
| Class A:mitochondrionClass D:plastid (p = 0.78)mitochondrion (p = 0.82) | GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3) CARBONATE DEHYDRATASE |
AT2G33210 | Predictedpull down | FSW = 0.0270
| Class C:mitochondrion | HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING |
AT4G02580 | Predictedpull down | FSW = 0.2500
| Class C:mitochondrion | NADH-UBIQUINONE OXIDOREDUCTASE 24 KDA SUBUNIT PUTATIVE |
AT5G08530 | Predictedpull down | FSW = 0.5714
| Class C:mitochondrion | CI51 (51 KDA SUBUNIT OF COMPLEX I) 4 IRON 4 SULFUR CLUSTER BINDING / FMN BINDING / NAD OR NADH BINDING / NADH DEHYDROGENASE (UBIQUINONE)/ OXIDOREDUCTASE ACTING ON NADH OR NADPH |
AT1G53240 | Predictedin vitroAffinity Capture-MS | FSW = 0.0714
| Class C:mitochondrion | MALATE DEHYDROGENASE (NAD) MITOCHONDRIAL |
AT5G09660 | Predictedin vitroAffinity Capture-MS | FSW = 0.0288
| Unknown | PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE |
AT4G26300 | Predictedpull down | FSW = 0.0588
| Unknown | EMB1027 (EMBRYO DEFECTIVE 1027) ATP BINDING / AMINOACYL-TRNA LIGASE/ ARGININE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT1G22940 | Predictedpull down | FSW = 0.1250
| Unknown | TH1 (THIAMINE REQUIRING 1) HYDROXYMETHYLPYRIMIDINE KINASE/ PHOSPHOMETHYLPYRIMIDINE KINASE/ THIAMIN-PHOSPHATE DIPHOSPHORYLASE |
ATCG01110 | Predictedblue native page | FSW = 0.0410
| Unknown | ENCODES THE 49KDA PLASTID NAD(P)H DEHYDROGENASE SUBUNIT H PROTEIN ITS TRANSCRIPTION IS REGULATED BY AN NDHF-SPECIFIC PLASTID SIGMA FACTOR SIG4 |
AT1G25420 | Predictedtwo hybridtwo hybrid | FSW = 0.0325
| Unknown | UNKNOWN PROTEIN |
AT4G29440 | Predictedtwo hybrid | FSW = 0.0724
| Unknown | UNKNOWN PROTEIN |
AT2G40600 | Predictedpull down | FSW = 0.2353
| Unknown | APPR-1-P PROCESSING ENZYME FAMILY PROTEIN |
AT1G19290 | PredictedGene fusion method | FSW = 0.0426
| Unknown | LOCATED IN MITOCHONDRION EXPRESSED IN 12 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PENTATRICOPEPTIDE REPEAT (INTERPROIPR002885) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN (TAIRAT5G558401) HAS 31003 BLAST HITS TO 6161 PROTEINS IN 194 SPECIES ARCHAE - 6 BACTERIA - 22 METAZOA - 935 FUNGI - 736 PLANTS - 27904 VIRUSES - 0 OTHER EUKARYOTES - 1400 (SOURCE NCBI BLINK) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454