Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G39080 - ( VHA-A3 (VACUOLAR PROTON ATPASE A3) ATPase )

10 Proteins interacs with AT4G39080
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G21410

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.1471

Class C:

vacuole

plastid

VHA-A2 (VACUOLAR PROTON ATPASE A2) ATPASE
AT5G56000

Predicted

two hybrid

FSW = 0.0476

Class C:

vacuole

plasma membrane

HEAT SHOCK PROTEIN 81-4 (HSP81-4)
AT5G52640

Predicted

two hybrid

FSW = 0.0118

Class C:

plasma membrane

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT1G54080

Predicted

two hybrid

FSW = 0.0627

Class C:

plasma membrane

OLIGOURIDYLATE-BINDING PROTEIN PUTATIVE
AT5G14170

Predicted

two hybrid

two hybrid

FSW = 0.0192

Unknown

CHC1
AT2G28520

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1062

Unknown

VHA-A1 (VACUOLAR PROTON ATPASE A 1) ATPASE
AT3G14100

Predicted

two hybrid

FSW = 0.0566

Unknown

OLIGOURIDYLATE-BINDING PROTEIN PUTATIVE
AT2G41250

Predicted

two hybrid

FSW = 0.1131

Unknown

HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN
AT5G09230

Predicted

two hybrid

two hybrid

FSW = 0.1153

Unknown

SRT2 (SIRTUIN 2) DNA BINDING / NAD OR NADH BINDING / NAD-DEPENDENT HISTONE DEACETYLASE/ ZINC ION BINDING
AT5G10260

Predicted

two hybrid

two hybrid

FSW = 0.0203

Unknown

ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454